Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2183
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical... 31 0.38
AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical... 31 0.38
U40028-5|AAA81116.1| 137|Caenorhabditis elegans Hmg protein 11 ... 29 2.7
AF056578-1|AAC78600.1| 137|Caenorhabditis elegans high mobility... 29 2.7
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 27 8.1
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 27 8.1
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 8.1
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 8.1
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 8.1
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 27 8.1
>AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical
protein Y56A3A.7b protein.
Length = 570
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 174 GRGVSLRP-APRPRKGTRRPHDAMSPVTVLVEPVACDEGLDE 296
G G++L P PRP + A + TV+ PVA E +DE
Sbjct: 347 GEGIALTPETPRPSQEDEAEAPAAAETTVVSAPVAASEDIDE 388
>AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical
protein Y56A3A.7a protein.
Length = 457
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 174 GRGVSLRP-APRPRKGTRRPHDAMSPVTVLVEPVACDEGLDE 296
G G++L P PRP + A + TV+ PVA E +DE
Sbjct: 347 GEGIALTPETPRPSQEDEAEAPAAAETTVVSAPVAASEDIDE 388
>U40028-5|AAA81116.1| 137|Caenorhabditis elegans Hmg protein 11
protein.
Length = 137
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 196 PLHAPARGRDDPTTQ*ARSPSSSNPSLATKGSTSELTHRHSPLSFSPDL 342
P RGR + Q A+SP + +P ++ S R +P S++ D+
Sbjct: 58 PYSGAPRGRPRKSDQVAKSPVAKSPVASSSADASPKRSRGAPKSYAEDV 106
>AF056578-1|AAC78600.1| 137|Caenorhabditis elegans high mobility
group protein I alpha protein.
Length = 137
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 196 PLHAPARGRDDPTTQ*ARSPSSSNPSLATKGSTSELTHRHSPLSFSPDL 342
P RGR + Q A+SP + +P ++ S R +P S++ D+
Sbjct: 58 PYSGAPRGRPRKSDQVAKSPVAKSPVASSSADASPKRSRGAPKSYAEDV 106
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPTEFLAGSSQWV 353
P P P++ PH + V L + C EG + + Q PT+ + + +W+
Sbjct: 1074 PKPAPQEVPDLPHQPPAFVKQLGPAIQCMEGDNVYLEAQVTPTDDNSLTYEWL 1126
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPTEFLAGSSQWV 353
P P P++ PH + V L + C EG + + Q PT+ + + +W+
Sbjct: 991 PKPAPQEVPDLPHQPPAFVKQLGPAIQCMEGDNVYLEAQVTPTDDNSLTYEWL 1043
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPTEFLAGSSQWV 353
P P P++ PH + V L + C EG + + Q PT+ + + +W+
Sbjct: 1312 PKPAPQEVPDLPHQPPAFVKQLGPAIQCMEGDNVYLEAQVTPTDDNSLTYEWL 1364
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPTEFLAGSSQWV 353
P P P++ PH + V L + C EG + + Q PT+ + + +W+
Sbjct: 1312 PKPAPQEVPDLPHQPPAFVKQLGPAIQCMEGDNVYLEAQVTPTDDNSLTYEWL 1364
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPTEFLAGSSQWV 353
P P P++ PH + V L + C EG + + Q PT+ + + +W+
Sbjct: 1312 PKPAPQEVPDLPHQPPAFVKQLGPAIQCMEGDNVYLEAQVTPTDDNSLTYEWL 1364
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 195 PAPRPRKGTRRPHDAMSPVTVLVEPVACDEGLDERINPQTQPTEFLAGSSQWV 353
P P P++ PH + V L + C EG + + Q PT+ + + +W+
Sbjct: 1007 PKPAPQEVPDLPHQPPAFVKQLGPAIQCMEGDNVYLEAQVTPTDDNSLTYEWL 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,066
Number of Sequences: 27780
Number of extensions: 181661
Number of successful extensions: 549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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