Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2181
         (319 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   1.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   2.4  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   4.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   4.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   5.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   7.2  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 267 FYDLNRPVNHKLP 305
           FY +N PV HK P
Sbjct: 434 FYKMNHPVYHKDP 446


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 15  LVYPTRLWVITAMSLIKF 68
           LVY   +W+ T M+  KF
Sbjct: 729 LVYIATVWICTLMNRCKF 746


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 105 VRTLTPPVKTVIVPKA 152
           +RT T P K  I PKA
Sbjct: 1   IRTHTLPCKCTICPKA 16


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 110 HSNTSSKNS-DCSKGHCER 163
           +SN SS +  DCSKG+ ++
Sbjct: 86  NSNYSSNSKPDCSKGNADQ 104


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 107 AHSNTSSKNSDCSKGH 154
           A  N +SKN D  +GH
Sbjct: 103 ASVNENSKNGDDDEGH 118


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 282 GLSHRNTGPVLIQYAVHLC 226
           G SHRN    +   AV LC
Sbjct: 189 GFSHRNQPTSIDLNAVRLC 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,748
Number of Sequences: 336
Number of extensions: 1580
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5942776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)