Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2181
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   1.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   2.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    24   4.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   6.4  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 240 HTELALAPYFYDLNRPVNHKL 302
           H E+ L  + YDLN P++ KL
Sbjct: 145 HGEIRLDTFHYDLNAPIHAKL 165


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 216 LGLSQLL-TAGSMELDKHYLSQW 151
           LG +++L TAG  +L KH L QW
Sbjct: 20  LGSNRVLETAGVSQLSKHLLPQW 42


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 180 ELDKHYLSQWPLEQSLFLLEVLECAPQT 97
           ELDKH  S + +E   FLL  L    QT
Sbjct: 316 ELDKHLKSDFDIESFCFLLHHLLSLYQT 343


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 33  LWVITAMSLIKFLGSQFSCIRTFVVRTLTPPVKTV 137
           LWV T+  L++F     +CI   ++ T    + TV
Sbjct: 321 LWVNTSSVLVQFTNRNSTCITARLLDTELKSIHTV 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,886
Number of Sequences: 5004
Number of extensions: 25135
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)