Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2181
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 30 0.45
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 28 1.8
08_02_1028 - 23752118-23752274,23753918-23754053,23754236-237551... 28 1.8
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 27 3.2
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 27 4.2
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 4.2
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 4.2
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 26 5.6
11_06_0067 - 19749542-19749736,19750078-19750260,19750535-197507... 26 7.4
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 26 7.4
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 26 7.4
04_03_0486 + 16463144-16463216,16464058-16464105,16464415-164644... 25 9.7
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 25 9.7
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 259 ASANSVCGSSMLSTTRSLTAAHC 191
A N+ CGS +++TTRS+T A C
Sbjct: 269 ALLNNNCGSRIITTTRSVTVASC 291
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 122 SSKNSDCSKGHCER*CLSNSIEPAVSSCERPS 217
+S S+CS+ HC R L N A+ C+ S
Sbjct: 666 NSNKSNCSERHCRRLKLENIWRRAIGKCQSRS 697
>08_02_1028 -
23752118-23752274,23753918-23754053,23754236-23755195,
23755770-23756373
Length = 618
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 201 LLTAGSMELDKHYLSQWPLEQSLFLLEVLECAPQTYGCMKIG 76
L AG +E Y+ + P E + L CA QT+G +++G
Sbjct: 375 LSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLG 416
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 27.1 bits (57), Expect = 3.2
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 10 TYWYIPPDC 36
TYWY+PP+C
Sbjct: 626 TYWYLPPEC 634
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 198 AAVRDLVVLSIDEPHTEL 251
+ V D VVL ID PH+EL
Sbjct: 685 SCVSDFVVLKIDAPHSEL 702
>08_01_0509 +
4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 250 NSVCGSSMLSTTR-SLTAAHCWFDG 179
N+ CGS ++ TTR + A+HC DG
Sbjct: 248 NNRCGSRIVMTTRNAAVASHCSSDG 272
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 14 TGISHPIVGNYGYVVD*ISWIPIFMHPYVCG 106
T I HP NYGY I + P + +PYV G
Sbjct: 462 TKIVHPNNANYGYS---IPFDPAYCNPYVSG 489
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 89 HPYVCGAHSNTSSKNSDCSKGHCER*CLSNSI-EPAVSSCERPSGT 223
HPY + S+ +S C + R C++ ++ P + +PSGT
Sbjct: 453 HPYPLSTPFSPSTPSSTCKRKKRRRSCVTIAVPAPLPALTRKPSGT 498
>11_06_0067 -
19749542-19749736,19750078-19750260,19750535-19750753,
19750867-19750922,19751160-19751211
Length = 234
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 297 YD*QVGLSHRNTGPVLIQYAVHLCSVPLGLSQLLTAG 187
YD V + G ++ ++ + +PLGLS+LL+ G
Sbjct: 88 YDDLVAVKRYIRGDLIQEFMEEMTILPLGLSRLLSGG 124
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 189 GSMELDKHYLSQWPLEQSLFLLEVLECAPQTY 94
GS++ K LS WPL S+ L V Y
Sbjct: 270 GSLDCKKSLLSNWPLMSSIILYCVFSFHDMAY 301
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 225 SVPLGLSQLLTAGSMELDKHYLS 157
S+P GLS LL ++L K++LS
Sbjct: 504 SIPTGLSSLLNLQFLDLSKNHLS 526
>04_03_0486 +
16463144-16463216,16464058-16464105,16464415-16464467,
16465429-16465494,16465705-16465779,16466333-16466407,
16467538-16467608,16467698-16467749,16468461-16468550,
16469359-16469451,16469590-16469697
Length = 267
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 191 LVRWS*TSIIFHNGLWNNHCFYWR 120
++ WS I+FHN L + C Y R
Sbjct: 63 VISWSPRIIVFHNFLSSEECDYLR 86
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 90 IRTFVVRTLTPPVKTVIVPKAIVKDNACLTPSNQQ 194
IR LT V TV+V K I K N CL + Q
Sbjct: 493 IRNHPSDLLTADVITVVVQKEIFKWNCCLKDRDAQ 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,725,563
Number of Sequences: 37544
Number of extensions: 159836
Number of successful extensions: 374
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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