Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2181
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    29   0.96 
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    29   0.96 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical p...    26   5.1  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    26   5.1  
CU457741-6|CAM36347.1|  227|Caenorhabditis elegans Hypothetical ...    26   6.8  
Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical pr...    25   8.9  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    25   8.9  
AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine re...    25   8.9  
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    25   8.9  
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    25   8.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 241 CGSSMLSTTRSLTAAHCWFDGVR 173
           CG+S+L  T  +TAAHC+ +  R
Sbjct: 54  CGASILDKTHLITAAHCFEEDER 76


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 135 VIVPKAIVKD-NACLTPSNQQ*AAVRDLVVLSIDEPHTELALAPYFYDLNRPVNHKLPVN 311
           V+ P+  VK+ +  +   N    ++R  +VL I       + AP+FY  NRP    +PV 
Sbjct: 70  VLAPELAVKNLSFFIAWPNFVLGSIRSRLVLLITADRVLASCAPFFYHKNRPKISFIPVA 129

Query: 312 I 314
           I
Sbjct: 130 I 130


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 268 KYGASANSVCGSSMLSTTRSLTAAHCWFDG 179
           ++     +VCG  +++ +  +T+AHC F G
Sbjct: 37  RFPDGTTNVCGGVLIAPSIVITSAHCVFSG 66


>Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 219 PLGLSQLLTAGSMELD----KHYLSQWPLEQSLFLLEVLECAPQTYG 91
           P+G    L+ G M +      HY S  P   S +  E  +CAP +YG
Sbjct: 358 PVGPEHTLSCGKMPVKLNAIPHYQSYQPDWSSSWKPERCDCAPASYG 404


>Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical
           protein T26F2.1 protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 219 PLGLSQLLTAGSMELD----KHYLSQWPLEQSLFLLEVLECAPQTYG 91
           P+G    L+ G M +      HY S  P   S +  E  +CAP +YG
Sbjct: 358 PVGPEHTLSCGKMPVKLNAIPHYQSYQPDWSSSWKPERCDCAPASYG 404


>Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 219 PLGLSQLLTAGSMELD----KHYLSQWPLEQSLFLLEVLECAPQTYG 91
           P+G    L+ G M +      HY S  P   S +  E  +CAP +YG
Sbjct: 358 PVGPEHTLSCGKMPVKLNAIPHYQSYQPDWSSSWKPERCDCAPASYG 404


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 244 VCGSSMLSTTRSLTAAHCW 188
           +CG ++++    LTAAHC+
Sbjct: 61  ICGGTLITLKHVLTAAHCF 79


>CU457741-6|CAM36347.1|  227|Caenorhabditis elegans Hypothetical
           protein C42C1.6 protein.
          Length = 227

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 258 APYFYDLNRPVNHKLPVNI 314
           AP F  L+RPV H  P+N+
Sbjct: 209 APNFLHLSRPVLHAKPINL 227


>Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical
           protein T01H3.3 protein.
          Length = 599

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 261 GPVLIQYAVHLCSVPLGL--SQLLTAGSMELDKHYLSQWPLEQSLFLLEVL 115
           G V  +  V +C+VP GL  S L    +  + ++ L++W ++ ++FL  VL
Sbjct: 510 GRVFAEQIVAMCAVPFGLAFSILPMVVTYSVTENKLAEW-MKVTMFLFFVL 559


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   TYYLLVYPTRLWVITAMSLIKFLGSQFSCIR 95
           TY+L + P  L +IT +  + +L +Q  C R
Sbjct: 63  TYFLAIIPMVLSIITFIINLGYLIAQIKCFR 93


>AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein66 protein.
          Length = 298

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 252 LIQYAVHLCSVPLGLSQLLTAGSMELDKHYLSQWPLEQSLFLLEVL 115
           LI+  +  C +  G+S          D+ +L Q  ++ S+F+LE+L
Sbjct: 189 LIKVKLLSCKLGSGISPASVRKLSSRDRRFLRQTVIQGSVFMLELL 234


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = +3

Query: 129 KTVIVPKAIVKDNACLTPS 185
           +++I+P+A++++NAC+  S
Sbjct: 294 ESIILPEAVIEENACVLQS 312


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = +3

Query: 129 KTVIVPKAIVKDNACLTPS 185
           +++I+P+A++++NAC+  S
Sbjct: 301 ESIILPEAVIEENACVLQS 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,517,419
Number of Sequences: 27780
Number of extensions: 143735
Number of successful extensions: 386
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)