Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2179
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 109 2e-25
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 7e-08
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 51 7e-08
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 9e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 47 9e-07
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 47 1e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 5e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 2e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 2e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 5e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 8e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 2e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 2e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 3e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 6e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 7e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.002
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 35 0.005
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.007
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 34 0.007
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.007
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.012
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.016
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.016
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.028
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.064
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.064
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.11
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.34
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 0.59
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 0.59
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 0.59
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 0.79
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 1.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 1.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 2.4
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 4.2
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 24 7.3
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 24 7.3
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 24 7.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 24 7.3
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 24 9.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 9.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 24 9.7
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 24 9.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 109 bits (262), Expect = 2e-25
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Frame = +1
Query: 1 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDE 165
RGF F+ FK P+ +++VM+ EH ++ K +DPK+A R K+FVGG+ + +++E
Sbjct: 204 RGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEE 262
Query: 166 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 345
RNFF++FG +L+ + DK + +GF F+T+E+E V + P TI GK V+VKRA
Sbjct: 263 FRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Query: 346 TPK 354
TPK
Sbjct: 323 TPK 325
Score = 71.7 bits (168), Expect = 4e-14
Identities = 30/81 (37%), Positives = 56/81 (69%)
Frame = +1
Query: 118 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 297
GK+F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 298 TPKRTIGGKEVDVKRATPKPD 360
+ + + GK +D KRA P+ +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREE 242
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 7e-08
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +1
Query: 64 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 243
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 244 GFCFITFESEQVVNDLLKT 300
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.8 bits (116), Expect = 7e-08
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +1
Query: 34 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 213
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 214 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 351
PF + + + G F+TF +++ V+ ++T +T+ +E+ V++A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 4 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 102
G AF+ F E +DK + T+N K +D ++
Sbjct: 90 GIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.2 bits (107), Expect = 9e-07
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 121 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 297
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 298 TPKRTIGGKEVDV 336
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 47.2 bits (107), Expect = 9e-07
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Frame = +1
Query: 43 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 213
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 214 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA 345
+ +GF F++F + E+ + + + G+ ++V++A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.8 bits (106), Expect = 1e-06
Identities = 22/79 (27%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 115 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 291
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 292 LKTPKRTIGGKEVDVKRAT 348
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 5e-06
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 276
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 2e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKT 300
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 301 PKRTIGGKEVDVKRATPKP 357
+ I G+ V++ + P+P
Sbjct: 325 GTKEIDGRMVNLDLSNPRP 343
Score = 42.3 bits (95), Expect = 3e-05
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 303
+FVG LS ++D++ F G I + +P D + KGF ++TF ++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 304 KRTIGGKEVDVKRATPK 354
I G+ + +TP+
Sbjct: 428 GHFIAGRPCRLDFSTPR 444
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 42.7 bits (96), Expect = 2e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +1
Query: 64 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 222
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 223 KTKNQRKGFCFITF 264
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 5e-05
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 37 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 210
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 211 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 312
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 8e-05
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +1
Query: 91 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 270
DP K G +F+ L I + + + FS FG IL ++ D+ N KG+ F+ F+S
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDS 217
Query: 271 EQVVN 285
+ N
Sbjct: 218 VESAN 222
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 40.3 bits (90), Expect = 1e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 300
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 301 PKRTIGGKEVDVKRA-TPKP 357
K+ G+ + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 2e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 94 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 216
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 2e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 225
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.7 bits (86), Expect = 3e-04
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Frame = +1
Query: 73 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 210
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 211 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 357
PF KN + + F+ F + + + ++LK K T+G +++ +K P
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 24.6 bits (51), Expect = 5.5
Identities = 24/91 (26%), Positives = 37/91 (40%)
Frame = +1
Query: 70 TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 249
+I N +DP ++ V S++ D FS FG+IL + KG+
Sbjct: 373 SIPNSPIDPSNLYVKNLDDTVITCKSQLED-----LFSPFGSILSSMLACYPNSGISKGY 427
Query: 250 CFITFESEQVVNDLLKTPKRTIGGKEVDVKR 342
F+ F Q+ + K T+ G V KR
Sbjct: 428 GFVAF--RQI--EAAVRAKDTLNGMMVGKKR 454
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.9 bits (84), Expect = 6e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 97 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 264
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 7e-04
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 300
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 301 PKRTIGGKE--VDVKR 342
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.001
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 303
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 304 K-RTIGGKEVDVKRATPK 354
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 31.5 bits (68), Expect = 0.048
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +1
Query: 37 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 210
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 211 MPFDKTKNQRKGFCFITFESEQVVNDLLK 297
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 294
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +1
Query: 130 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 309
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 310 TIGGKEVDVKRATPK 354
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.9 bits (79), Expect = 0.002
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 121 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 297
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 298 T--PKRTIGGKEVDVKRATP 351
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.003
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 300
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 301 PKRTIG 318
KR +G
Sbjct: 302 GKRLLG 307
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.7 bits (76), Expect = 0.005
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 300
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 301 PKRTIGGKEVDVKRATPKP 357
+G +++ V+ + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.007
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 121 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 270
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 34.3 bits (75), Expect = 0.007
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 121 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 285
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.007
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 76 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 255
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 256 ITFESEQ 276
FE E+
Sbjct: 342 ACFEEEK 348
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.5 bits (73), Expect = 0.012
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 130 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 309
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 310 T-IGGKEVDVKRATP 351
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.1 bits (72), Expect = 0.016
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 264
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.1 bits (72), Expect = 0.016
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 97 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 273
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I + +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATL 61
Query: 274 QVVNDLLKTPKRTIGGKEVDVKRATPKP 357
+ + ++ ++++V A +P
Sbjct: 62 EQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.028
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 282
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.064
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 154 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 333
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 334 V 336
+
Sbjct: 309 I 309
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.1 bits (67), Expect = 0.064
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 264
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.11
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 142 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 270
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.34
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 88 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 249
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 0.59
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 213
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 0.59
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +1
Query: 52 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 231
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 232 NQRKG------FCFITFESE 273
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 3.2
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 124 IFVGGLSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 285
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 286 DL 291
L
Sbjct: 481 TL 482
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 0.59
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 94 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 234
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 0.79
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 1 RGFAFIVFKAPESIDKVMAAGEHTINNKK 87
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 1.0
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 270
+FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 303
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 124 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 213
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 121 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 294
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 4.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 202 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP-----KRTIGGKEVDVKRAT 348
+ E+P D ++ R +S+ N +LKTP K+T+ K++ AT
Sbjct: 43 DAELPQDAKEDLRPTETLTPLKSKAAQNGILKTPGTLQIKKTVNFKDISKDAAT 96
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 290 CLRLPKEQLVERRSM*SVQHQNQ 358
C RLPKE L+ R + +Q NQ
Sbjct: 454 CTRLPKELLMLGRCLMLIQKNNQ 476
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 25 KAPESIDKVMAAGEHTINNKKVDPKKA 105
K S+ K ++ HT N K + PKKA
Sbjct: 570 KVDLSVAKEISHFVHTTNRKHISPKKA 596
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 107 LAFFGSTFLLLMVCSPAAMTLSIDSGALN 21
+AFF + + +M C+ + T SI +G LN
Sbjct: 56 VAFFEAPSVWIMTCAFSPSTKSIAAGGLN 84
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.2 bits (50), Expect = 7.3
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 184 EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 360
+F +LE ++P + T+NQ KGF S++ + L + + E ++ T + D
Sbjct: 1513 DFAPLLE-DVP-NNTRNQIKGFVEKAISSKRAIAKLYSASEEKLFSTEKALREITKERD 1569
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -3
Query: 327 LLSTNCS---FGSLKQIIYNLLRFKCDETE 247
LL TN S S+ IIYN+ +FK ++E
Sbjct: 379 LLDTNISPLDASSIATIIYNMCKFKITKSE 408
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.8 bits (49), Expect = 9.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +3
Query: 315 WWKGGRCEACN 347
WW G C+AC+
Sbjct: 1116 WWPGNICQACH 1126
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 23.8 bits (49), Expect = 9.7
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = -3
Query: 324 LSTNCSFGSLKQIIYNLLRFKCDETEALSLVLCFVKGHLHF*DSSKFTEEVSDFII*DFT 145
+STN F S + IYNLL F +E+ F+ G + +S +F + I F
Sbjct: 497 ISTNSWFASYDKGIYNLL-FGMASSES------FINGQIAEKNSFQFPCSILPSYIDLFI 549
Query: 144 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY 40
+ S KNL F + V + + + H LV+
Sbjct: 550 SLMSFKNLNFKLFDYNLAHH-VKESMERAFHQLVF 583
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 330 DLLSTNCSFGSLKQIIYNLLRFKCD 256
D +S F + IYNLL F CD
Sbjct: 719 DQISNRSMFIGALEEIYNLLDFMCD 743
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,646
Number of Sequences: 5004
Number of extensions: 29304
Number of successful extensions: 161
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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