Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2177
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 510 NKRTTQLHNRDISLNNSTKLSHNIKPS------LSRNTNHNLNTSLNPSPGI 647
           N  T    N + + NN++  + ++  S      +  ++  N +TSL+PSP I
Sbjct: 128 NNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRI 179



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 570 SHNIKPSLSRNTNHNLNTSLNPSPGINLNLSTN 668
           SH+  P +S    +N NT    +   N N ++N
Sbjct: 114 SHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 146


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 510 NKRTTQLHNRDISLNNSTKLSHNIKPS------LSRNTNHNLNTSLNPSPGI 647
           N  T    N + + NN++  + ++  S      +  ++  N +TSL+PSP I
Sbjct: 76  NNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRI 127



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 570 SHNIKPSLSRNTNHNLNTSLNPSPGINLNLSTN 668
           SH+  P +S    +N NT    +   N N ++N
Sbjct: 62  SHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 94


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 510 NKRTTQLHNRDISLNNSTKLSHNIKPS------LSRNTNHNLNTSLNPSPGI 647
           N  T    N + + NN++  + ++  S      +  ++  N +TSL+PSP I
Sbjct: 259 NNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRI 310



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 570 SHNIKPSLSRNTNHNLNTSLNPSPGINLNLSTN 668
           SH+  P +S    +N NT    +   N N ++N
Sbjct: 245 SHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 277


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 371 PDPRYNSPDYKAPQYSAPQQYVSQAQ 448
           P   Y   D+  PQY+AP    S  Q
Sbjct: 43  PPITYPPSDWNCPQYNAPPYMSSVLQ 68


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 392 PDYKAPQYSAPQQYVSQAQPRNYGGKPN 475
           P Y   Q + P   V+  + +  GGKPN
Sbjct: 418 PRYTVAQLNYPGVTVTNIEVQAKGGKPN 445


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 371 PDPRYNSPDYKAPQYSAPQQYVSQAQ 448
           P   Y   D+  PQY+AP    S  Q
Sbjct: 34  PPITYPPSDWNCPQYNAPPYMSSVLQ 59


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 588 SLSRNTNHNLNTSLNPSPGINLNLSTNLPI 677
           S++  T  ++ T L PSP    + S NLP+
Sbjct: 309 SVATPTPTSVMTELYPSPVPGHSTSPNLPL 338


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 365 YTPDPRYNSPDYKAPQYSAPQQYVSQAQPR 454
           Y   P Y+  D +A  Y  PQQ +   + R
Sbjct: 80  YPRFPPYDRMDIRAAGYYGPQQQMDGQEYR 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,729
Number of Sequences: 336
Number of extensions: 2831
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)