Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2177
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 35 0.073
02_03_0196 + 16246729-16246859,16247133-16247304 33 0.22
01_05_0072 + 17891199-17892279,17893751-17893884,17893966-178941... 32 0.52
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741 31 0.68
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 31 1.2
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591... 30 1.6
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 30 2.1
08_01_0178 - 1509100-1511214 30 2.1
12_01_0106 - 833236-833568,835657-836098,837117-837227,837427-83... 29 3.6
09_01_0018 - 391827-392254,392553-392608,393976-394005,394666-39... 29 3.6
08_01_0177 + 1504472-1505033,1505035-1506647 29 4.8
06_01_0823 + 6216492-6217002,6217140-6218083 29 4.8
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 29 4.8
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 4.8
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 29 4.8
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 28 6.4
08_01_0333 + 2977397-2977648,2978416-2978784,2980108-2980169,298... 28 6.4
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 28 6.4
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 28 6.4
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 8.4
04_04_0079 + 22586803-22586923,22592541-22592860,22592991-225936... 28 8.4
04_03_0091 - 11043023-11043090,11043458-11043566,11044431-110445... 28 8.4
03_04_0205 - 18485933-18488446 28 8.4
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 28 8.4
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 34.7 bits (76), Expect = 0.073
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 371 PDPRYNSPDYKAPQYSAPQQYVSQAQPRNYGGKPNEDDGQYYPEL 505
P P Y SP YK+P Y +PQ A P DDG+ + +L
Sbjct: 223 PPPPYQSPPYKSPPYKSPQSR-QPAPPTTTVNNNPSDDGRKHSKL 266
>02_03_0196 + 16246729-16246859,16247133-16247304
Length = 100
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 680 KYW*IGTEVEIDTGAGVQAGIEVVVGIAAEAGLDIVAELGTVVEADISV 534
+Y IG + I G G+ GI + +GI G+D+ ++ V+ D+ V
Sbjct: 44 RYIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIDVDVDVDVDVDVDVDV 92
>01_05_0072 +
17891199-17892279,17893751-17893884,17893966-17894115,
17894207-17894524
Length = 560
Score = 31.9 bits (69), Expect = 0.52
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -1
Query: 228 LPSASVSSLKLMPSSCW*AAPNAP-FPLRYRASCTIAAVLGSPAYLGTRLAPSCCWHDTA 52
LPSA+ + S CW A + P F R+RA T + +LG G+ P +H A
Sbjct: 18 LPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGSSGLP--VFHPAA 75
Query: 51 TMTKADTISLYILNG 7
T+ + +L G
Sbjct: 76 TVRSDPDLGAAVLGG 90
>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
Length = 375
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 501 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTNHNLNTSLNPSPGINLNLSTN 668
S NK TT++ N IS S K+ H+++ ++ + L + +N NL+ + +
Sbjct: 169 SILNKMTTEMENPQISQETSEKVIHSVESNVIKTNGTELCSKVNIDFNTNLSATAS 224
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 411 NIVRHNNTSRKHSPATTAASPMKTT 485
N ++ +NTS+ SPAT A+SP+KT+
Sbjct: 895 NGLQESNTSQPSSPATEASSPIKTS 919
>03_05_0696 -
26856413-26856416,26857917-26858524,26859041-26859101,
26859181-26859557,26860314-26861156
Length = 630
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 531 HNRDISL-NNSTKLSHNIKPSLSRNTNHNLNTSLNPSPGINLNLSTNLPIFIPVY 692
HN L +N T S I+ L N HN + S+ P+PG L+LS N I P Y
Sbjct: 110 HNAGADLIHNDTHSSAQIEFGLLNN--HN-SMSVAPAPGQGLSLSLNTHILAPSY 161
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 378 LDTTLQITKHHNIVR-HNNTSRKHSPATTAASPMKTTDSTILSYTNKRTTQLHNRDISLN 554
LDT ++ +++ H N K+S A + K +DS + R T+LHNR+
Sbjct: 1228 LDTGNELNHQTDLINGHANDKPKNSLAASTKRERKISDSL---HPRLRRTELHNRNGRHQ 1284
Query: 555 NSTKLSHNIKPS 590
+ + KPS
Sbjct: 1285 SEANIDKQSKPS 1296
>08_01_0178 - 1509100-1511214
Length = 704
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 65 QQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFGAAYQQ 184
+Q AR P AGD + AA++ E R LS A Y+Q
Sbjct: 568 RQEALARSAPGLAGDARCAALLSELRELSARVASRREYEQ 607
>12_01_0106 -
833236-833568,835657-836098,837117-837227,837427-837755
Length = 404
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 375 ILDTTLQITKHHNIVRHNNTSRKHSPATTAASPMKTTDSTILSYTNKRT 521
ILDTT++ T +H+ +++ SPA A S T S T+ T
Sbjct: 198 ILDTTVRATNNHHPPAASSSCAAQSPAAAATSSSSDMMMTSTSSTSSET 246
>09_01_0018 -
391827-392254,392553-392608,393976-394005,394666-394736,
394819-394948,397627-397717,397798-397919,398014-398303
Length = 405
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 665 GTEVEIDTGAGVQAGIEVVVGIAAEAGLDIVAELGTVVE 549
G E EI+T ++ GIE+ +GI E I E+ T VE
Sbjct: 278 GKETEIETVKEIETGIEIGIGIGIET--VIAYEMRTTVE 314
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 65 QQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFGAAYQQ 184
+Q AR + AGD + AA+V E R LS A Y+Q
Sbjct: 623 RQEALARSARRLAGDARCAALVSELRELSARVANRREYEQ 662
>06_01_0823 + 6216492-6217002,6217140-6218083
Length = 484
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = -2
Query: 509 RIAQDSTVRRLHWACRRSCGAVL---ARRI 429
R A DSTVR L+ + RRSCGA L ARR+
Sbjct: 81 RAAPDSTVR-LYLSLRRSCGAPLVEVARRV 109
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 399 TKHHNIVRHNNTSRKHSPATTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTKLSHN 578
TK + +N S + AA K TD+ T + ++ L RDI+L+ S ++ +
Sbjct: 514 TKASKTILSSNMDIIRSLDSKAARQGKKTDALSFLRTPQVSSLLQLRDIALSGSADMNRS 573
Query: 579 IKPSLSRNTNHNLNTSLNPSP 641
+ ++ + ++ TS SP
Sbjct: 574 VPRAVRTSAVRSVTTSRAVSP 594
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 594 SRNTNHNLNTSLNPSPGINLNLST 665
+RNTNHN N SLN + L+ S+
Sbjct: 1644 ARNTNHNTNLSLNHETAVPLSRSS 1667
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 56 VSCQQHEGAR-RVPKYAGDPKTAAIVQEARYLSGNGAFGAA 175
+ C+ EG+ R + GD K + +Q+A + NGA GAA
Sbjct: 254 MDCKNFEGSEERKALFQGDHKNSIHMQQAANAAVNGAIGAA 294
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 534 NRDISLNNSTKLSHNIK--PSLSRNTNHNLNTSLNPSPGINLNLSTN 668
N++ L N+T +HNI+ +L+ N N+ N S SPGI TN
Sbjct: 764 NQNTRLGNNTTGNHNIRTDSTLASNLNNTTNNS-GTSPGIVQAPQTN 809
>08_01_0333 +
2977397-2977648,2978416-2978784,2980108-2980169,
2980271-2980418
Length = 276
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 623 GIEVVVGIAAEAGLDIVAELGTVVEADISVVELRSSLVRIA 501
G E +VG+AA AGL +VA + +VV S + SL A
Sbjct: 111 GAETLVGVAASAGLAVVAVVLSVVHISGSHLNPAVSLAMAA 151
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +2
Query: 68 QHEGARRV-PKYAGDPKTAAIVQEARYLSGNGAFGAAYQQEDGI--NFKEETDAEGNRKG 238
+H+ R PK+ A+V++ + + GNG + EDG+ K+ +A + K
Sbjct: 477 EHKADHRTKPKHRSGKTVFAMVKDLKIVFGNGPGSQPIESEDGVYGKLKDTLEACNDLKH 536
Query: 239 SYSYID--PSGQRKTVNYIA 292
D P ++K ++Y++
Sbjct: 537 MEQRGDLHPEPKKKGIHYLS 556
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 249 YE*LPFLLPSASVSSLKLMPS 187
YE LP +LP V+S++LMPS
Sbjct: 180 YEPLPVMLPPPPVASMQLMPS 200
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Frame = +3
Query: 396 ITKHHNIVRHNNTSRKHSPATTAASPMKTT---------DSTILSYTNK-RTTQLHNRDI 545
I+KHHN V +T+RK + M+ + DS SY + R + NR
Sbjct: 540 ISKHHNTVDQKSTTRKDDSRNRSQKIMELSEVRGTNTEHDSRTQSYHQEDRRRYIENRAS 599
Query: 546 SLNNSTKLSHNIKPSLSRN 602
SL +S K + + + + ++
Sbjct: 600 SLQSSVKTTSDTRTQVDQH 618
>04_04_0079 +
22586803-22586923,22592541-22592860,22592991-22593623,
22593717-22594166
Length = 507
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 665 GTEVEIDTGAGVQAGIEVVVGIAAEAGLDIVAELG 561
GTE D G GV A + V IAA GL ++G
Sbjct: 4 GTEAARDYGGGVTASVVVTCLIAASCGLIFGYDIG 38
>04_03_0091 -
11043023-11043090,11043458-11043566,11044431-11044577,
11044678-11044776,11044857-11044982,11045448-11045582,
11046391-11046468,11046553-11046678,11046828-11046968
Length = 342
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 247 IYRSEWPEEDSELHRRQKWIPSRW 318
+ S+ +D+ELHR W+P W
Sbjct: 76 VLESQACADDNELHRMHTWLPDGW 99
>03_04_0205 - 18485933-18488446
Length = 837
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 468 SPMKTTDSTILSYTNK-RTTQLHNRDISLNNSTKLSHNIKPSLSRNT 605
S +++ D T ++ + +T L N +SL +S ++ H IKPS+ T
Sbjct: 560 SNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYT 606
>01_07_0306 +
42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 522 TQLHNRDIS-LNNSTKLSHNIKPSLSRNTN-HNLNTSLNPSPGINLNLSTNLP 674
T + + D+S L + ++ +S++++ HNLNTS N S +++ +++LP
Sbjct: 667 TFISSEDLSFLKHQITFLEELEMGMSKSSDEHNLNTSTNYSGPLSMGQNSSLP 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,615
Number of Sequences: 37544
Number of extensions: 350740
Number of successful extensions: 1570
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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