Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2177
         (711 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY236870-1|AAP41817.1|  701|Homo sapiens MUC19 protein.                30   7.1  
AK093065-1|BAC04041.1|  280|Homo sapiens protein ( Homo sapiens ...    30   7.1  
AY865621-1|AAW56073.1|  730|Homo sapiens cyclin T2 protein.            30   9.4  
AF048732-1|AAC39666.1|  730|Homo sapiens cyclin T2b protein.           30   9.4  
AC016725-2|AAY14998.1|  730|Homo sapiens unknown protein.              30   9.4  

>AY236870-1|AAP41817.1|  701|Homo sapiens MUC19 protein.
          Length = 701

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 453 ATTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTKLSHN-IKPSLSRNTNHNLNTSL 629
           ATT  S  + T STI + T+ R T      ++   +  +S N I PS S NT     TS 
Sbjct: 192 ATTRGSAKQGTRSTIEATTSFRGTGTTGSGMNTGTTGVVSGNTISPS-SFNTEATSGTSE 250

Query: 630 NPSPG 644
            P+PG
Sbjct: 251 RPNPG 255


>AK093065-1|BAC04041.1|  280|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35746 fis, clone TESTI2004399, moderately
           similar to APOMUCIN. ).
          Length = 280

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 453 ATTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTKLSHN-IKPSLSRNTNHNLNTSL 629
           ATT  S  + T STI + T+ R T      ++   +  +S N I PS S NT     TS 
Sbjct: 89  ATTRGSAKQGTRSTIEATTSFRGTGTTGSGMNTGTTGVVSGNTISPS-SFNTEATSGTSE 147

Query: 630 NPSPG 644
            P+PG
Sbjct: 148 RPNPG 152


>AY865621-1|AAW56073.1|  730|Homo sapiens cyclin T2 protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +3

Query: 402 KH-HNIVRHNNTSRKHS----PATTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTK 566
           KH H+    ++   KHS    P T   SP+  +   I S ++    +LH  D S N+ +K
Sbjct: 574 KHSHSHSGSSSGGSKHSADGIPPTVLRSPVGLSSDGISSSSSSSRKRLHVNDASHNHHSK 633

Query: 567 LSHNIKPSLSRNTN 608
           +S + K S S +++
Sbjct: 634 MSKSSKSSGSSSSS 647


>AF048732-1|AAC39666.1|  730|Homo sapiens cyclin T2b protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +3

Query: 402 KH-HNIVRHNNTSRKHS----PATTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTK 566
           KH H+    ++   KHS    P T   SP+  +   I S ++    +LH  D S N+ +K
Sbjct: 574 KHSHSHSGSSSGGSKHSADGIPPTVLRSPVGLSSDGISSSSSSSRKRLHVNDASHNHHSK 633

Query: 567 LSHNIKPSLSRNTN 608
           +S + K S S +++
Sbjct: 634 MSKSSKSSGSSSSS 647


>AC016725-2|AAY14998.1|  730|Homo sapiens unknown protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +3

Query: 402 KH-HNIVRHNNTSRKHS----PATTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTK 566
           KH H+    ++   KHS    P T   SP+  +   I S ++    +LH  D S N+ +K
Sbjct: 574 KHSHSHSGSSSGGSKHSADGIPPTVLRSPVGLSSDGISSSSSSSRKRLHVNDASHNHHSK 633

Query: 567 LSHNIKPSLSRNTN 608
           +S + K S S +++
Sbjct: 634 MSKSSKSSGSSSSS 647


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,769,411
Number of Sequences: 237096
Number of extensions: 1777868
Number of successful extensions: 9441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9422
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)