Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2175
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 29 0.55
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 29 0.73
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 3.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 3.9
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.9
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 26 6.8
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 26 6.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.0
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 621 KLIKAYQKHSNTYQSCTNHKYKSVLLKKWTQDVMDN-ELLIEFRPYKNCDAFCLMCLSVV 445
K I A + TY++ T H +S LL++W + +M+N + L++ +N + V
Sbjct: 59 KAISAANEAFKTYKNFT-HVQRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVT 117
Query: 444 TINEYL 427
T + YL
Sbjct: 118 TCSGYL 123
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 430 FVLWQVFVSHNRLLGKTTTIDAATAIVHVCVSEYLLLE 317
F+ W + HN L GK +TI T+IVH ++ +E
Sbjct: 266 FLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIE 303
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/102 (24%), Positives = 41/102 (40%)
Frame = -2
Query: 579 SCTNHKYKSVLLKKWTQDVMDNELLIEFRPYKNCDAFCLMCLSVVTINEYLCCGKCLFPI 400
+C N ++ S KK D+ +I+FR KN ++ ++ I Y CL I
Sbjct: 54 NCCNRRFHSTWQKKKHDDLTATVPVIDFR--KNQKLTSIVVNAIQAIYWYARRSNCLTGI 111
Query: 399 IDYLEKRRQLTPRQQLYMFVFLSICYWKEASGATFGDNEKLI 274
+ + L P Y FV L K + + +K+I
Sbjct: 112 NEAEYIWKSLIPESIFYHFVSLQSFIRKYLTDVFYCSAQKVI 153
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 435 EYLCCGKCLFPIIDYLEKRRQLTP 364
++ CCG CL I Y +KRR + P
Sbjct: 894 KHACCGDCLSEHIQY-QKRRNIIP 916
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = -2
Query: 510 LLIEFRPYKNCDAFCLMCL--SVVTINEYLCCGKCLFPIIDYLEKRRQLTPRQQLYMFVF 337
L++ F+PY++ + L CL +EYL + I Y+ + + + +
Sbjct: 2883 LIVPFKPYESLGKYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVKIA 2942
Query: 336 LSICYWKEASGATFGDNE-KLIWIHRFRIAWESADVPFVCYFASS 205
+ + K+ SG +++ + F + W+ + F C + S+
Sbjct: 2943 VPV---KQISGLRVSEHDLNSSCLFTFAVFWQRCESLFDCEYLST 2984
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/65 (26%), Positives = 23/65 (35%)
Frame = +1
Query: 493 TKFYEKFVVHDVLRPFFQQDTFIFVICTTLVRVRVFLISFDKFKTIGIRPRHYVLHRLFK 672
T F K +P +F I + L V+ FD G++P H L K
Sbjct: 350 TTFINKMSDVKEFKPSISTANTLFSIASRLKDVKWLSAGFDMIDKYGLKPTHVTYRSLLK 409
Query: 673 RQKLL 687
LL
Sbjct: 410 AYCLL 414
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 177 CPSSIANILWTTQNS 221
CP SI N++WT Q++
Sbjct: 292 CPRSIQNLVWTNQST 306
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 490 VQKLRRILPNVPVGCDNQRVFVLWQVFVSHNRLLGKTTTIDAATAIVHVCV 338
V KLR PN VG + + W+ VS R L KTTT ++T H V
Sbjct: 52 VGKLRSH-PNEKVGEQAREIVKKWKADVSKGRPL-KTTTTTSSTPSKHADV 100
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 2 VNQRIDIISKNIEDLKNSLKS 64
+N+ IDI+ ++E LK SLK+
Sbjct: 447 LNREIDILQNHVEKLKMSLKN 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,311
Number of Sequences: 5004
Number of extensions: 68820
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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