Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2175
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81517-1|CAB04208.1|  520|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 644 VIMFCTVCLKDRNYYMFKLF 703
           + +FC VCLK+R Y +F+ F
Sbjct: 250 IFVFCEVCLKNRLYLLFQFF 269


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -2

Query: 621 KLIKAYQKHSNTYQSCTN--HKYK-SVLLKKWTQDVMDNELLIEFRPYKNCDAF-CL 463
           KL   + KHS   +   N  + YK  V+  +W  D +   L++  +PYK  D+  CL
Sbjct: 489 KLYIIFSKHSKAIEESKNIENLYKCDVVTMEWVLDSISEYLILPTQPYKAVDSIGCL 545


>Z81517-1|CAB04208.1|  520|Caenorhabditis elegans Hypothetical
           protein F28B1.1 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
 Frame = +1

Query: 337 KHKHVQLLSRRQLSSFFQVIYYGKQTLATAQILVDCHNRQAH*AKCVAI------FVRTK 498
           K  +  LL R  +  F  ++Y+  Q ++   +L D  N      KC A+       VR  
Sbjct: 156 KGNYASLLYRSNMRIFLLIVYFLLQDVSGCLVLHDYLNPDMRGCKCPAVKLFNQEDVRKN 215

Query: 499 FYEKFVV-HDVLRPFFQQ--DTFIFVICTTLVRVRVFL 603
              +++  H V  P  +   D F+ ++C  +  VR FL
Sbjct: 216 EGGRYLEDHQVWDPIVESVGDCFLRIMCKPVPGVRSFL 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,919
Number of Sequences: 27780
Number of extensions: 397751
Number of successful extensions: 1109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)