Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2174
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 258 2e-69
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 258 2e-69
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 197 5e-51
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 140 6e-48
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 157 5e-39
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 157 5e-39
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 141 3e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 108 4e-24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 88 4e-18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 88 4e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 84 9e-17
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 84 9e-17
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 84 9e-17
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 0.001
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 38 0.006
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.13
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.13
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.22
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.22
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.22
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.67
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 0.67
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.67
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 29 3.6
Z72505-6|CAA96613.2| 358|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF216966-1|AAF23508.1| 358|Caenorhabditis elegans seven transme... 28 4.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.3
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 258 bits (633), Expect = 2e-69
Identities = 123/143 (86%), Positives = 128/143 (89%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
KGSFKYAWVLDKLKAERERGITIDIA WKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 378 CAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEI 557
CAVL+VA GTGEFEAGI KNGQTREHALLA TLGVKQLIV NKMD TEPP+SE RF EI
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
Query: 558 KKEVF*YIKKIGYNPGAVAFVPI 626
EV +IKKIGYNP AV FVPI
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPI 193
Score = 108 bits (259), Expect = 4e-24
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 258 bits (633), Expect = 2e-69
Identities = 123/143 (86%), Positives = 128/143 (89%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
KGSFKYAWVLDKLKAERERGITIDIA WKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 378 CAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEI 557
CAVL+VA GTGEFEAGI KNGQTREHALLA TLGVKQLIV NKMD TEPP+SE RF EI
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
Query: 558 KKEVF*YIKKIGYNPGAVAFVPI 626
EV +IKKIGYNP AV FVPI
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPI 193
Score = 108 bits (259), Expect = 4e-24
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 197 bits (481), Expect = 5e-51
Identities = 97/122 (79%), Positives = 104/122 (85%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
KGSFKYAWVLDKLKAERERGITIDIA WKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 378 CAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEI 557
CAVL+VA GTGEFEAGI KNGQTREHALLA TLGVKQL V+ T P S R + I
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTI 167
Query: 558 KK 563
++
Sbjct: 168 QR 169
Score = 108 bits (259), Expect = 4e-24
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 140 bits (339), Expect(2) = 6e-48
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
KGSFKYAWVLDKLKAERERGITIDIA WKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 378 CAVLIVA 398
CAVL+VA
Sbjct: 111 CAVLVVA 117
Score = 108 bits (259), Expect = 4e-24
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 68.5 bits (160), Expect(2) = 6e-48
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = +3
Query: 489 LIVGVNKMDCTEPPYSEPRFEEIKKEVF*YIKKIGYNPGAVAFVPI 626
L+V NKMD TEPP+SE RF EI EV +IKKIGYNP AV FVPI
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI 159
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 157 bits (382), Expect = 5e-39
Identities = 78/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
K SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD
Sbjct: 214 KASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQAD 273
Query: 378 CAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEI 557
A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D + +S+ RF+EI
Sbjct: 274 AAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEI 331
Query: 558 KKEVF*YI-KKIGYNPGAVAFVPI 626
K + ++ ++ G++ FVP+
Sbjct: 332 KNNLSVFLTRQAGFS--KPKFVPV 353
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +2
Query: 56 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA G+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK 214
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 157 bits (382), Expect = 5e-39
Identities = 78/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
K SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD
Sbjct: 232 KASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQAD 291
Query: 378 CAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEI 557
A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D + +S+ RF+EI
Sbjct: 292 AAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEI 349
Query: 558 KKEVF*YI-KKIGYNPGAVAFVPI 626
K + ++ ++ G++ FVP+
Sbjct: 350 KNNLSVFLTRQAGFS--KPKFVPV 371
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +2
Query: 56 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA G+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK 232
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 141 bits (342), Expect = 3e-34
Identities = 64/141 (45%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Frame = +3
Query: 204 SFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 383
S+ +W +D ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD A
Sbjct: 155 SWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLA 214
Query: 384 VLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEIKK 563
VL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+
Sbjct: 215 VLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEG 274
Query: 564 EVF*YIKKIGYNPGA-VAFVP 623
++ +++K+G+NP + +VP
Sbjct: 275 KLTPFLRKLGFNPKTDITYVP 295
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +2
Query: 50 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 196
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKG 152
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 108 bits (259), Expect = 4e-24
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGE 199
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 198 KGSFKYAWVLDKLKAER 248
KGSFKYAWVLDKLK +
Sbjct: 51 KGSFKYAWVLDKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 88.2 bits (209), Expect = 4e-18
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 404
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 405 TGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTE 524
G E QT+EH +LA +GVK + + +NK D E
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 KTHINIVVIGHVDSGKSTTT 118
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 88.2 bits (209), Expect = 4e-18
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 404
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 405 TGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTE 524
G E QT+EH +LA +GVK + + +NK D E
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 KTHINIVVIGHVDSGKSTTT 118
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 83.8 bits (198), Expect = 9e-17
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 404
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 405 TGEFEAGIXKNGQTREHALLAFTLGV--KQLIVGVNKMDCTEPPYSEPRFEEIKKEVF*Y 578
G QTREH LLA +GV ++V +NK+D E P +E R E ++ ++
Sbjct: 147 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 196
Query: 579 IKKIGYNPG 605
+ + GY PG
Sbjct: 197 LNEFGY-PG 204
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 53 KEKTHINIVVIGHVDSGKSTTT 118
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 83.8 bits (198), Expect = 9e-17
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 404
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 405 TGEFEAGIXKNGQTREHALLAFTLGV--KQLIVGVNKMDCTEPPYSEPRFEEIKKEVF*Y 578
G QTREH LLA +GV ++V +NK+D E P +E R E ++ ++
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 197
Query: 579 IKKIGYNPG 605
+ + GY PG
Sbjct: 198 LNEFGY-PG 205
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 53 KEKTHINIVVIGHVDSGKSTTT 118
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 83.8 bits (198), Expect = 9e-17
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 404
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 405 TGEFEAGIXKNGQTREHALLAFTLGV--KQLIVGVNKMDCTEPPYSEPRFEEIKKEVF*Y 578
G QTREH LLA +GV ++V +NK+D E P +E R E ++ ++
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 197
Query: 579 IKKIGYNPG 605
+ + GY PG
Sbjct: 198 LNEFGY-PG 205
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 53 KEKTHINIVVIGHVDSGKSTTT 118
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 53.2 bits (122), Expect = 1e-07
Identities = 35/98 (35%), Positives = 49/98 (50%)
Frame = +3
Query: 222 VLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 401
+LDKL+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 402 GTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMD 515
G QT + LAF + Q+I +NK+D
Sbjct: 136 NQG-------VQAQTIANFWLAFEKNI-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 187
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 GITIDIAXWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIX 431
GIT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE---- 243
Query: 432 KNGQTREHALLAFTLGVKQLIVGVNKMD 515
QT + A V QL+V VNK+D
Sbjct: 244 ---QTAQSIKFAKDANV-QLVVAVNKID 267
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.5 bits (93), Expect = 5e-04
Identities = 34/107 (31%), Positives = 46/107 (42%)
Frame = +3
Query: 195 VKGSFKYAWVLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 374
V+G +D + ER+RGITI A + + IID PGH DF +
Sbjct: 77 VRGKDDVGATMDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVL 136
Query: 375 DCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLIVGVNKMD 515
D AVL++ G G G+ T L + + I VNKMD
Sbjct: 137 DGAVLVL-CGVG----GVQSQTFTVNRQLARYNV---PFICFVNKMD 175
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGID 151
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/86 (29%), Positives = 44/86 (51%)
Frame = +3
Query: 306 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVK 485
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGI--QPQTAEHLLLASKFCPN 126
Query: 486 QLIVGVNKMDCTEPPYSEPRFEEIKK 563
++I+ +NK D E ++++K
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 68 INIVVIGHVDSGKSTTT 118
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 222 VLDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 401
V D L ERERGIT+ A + + + +ID PGH DF + D V+++
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDG 123
Query: 402 GTG 410
G
Sbjct: 124 SAG 126
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGI 148
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +3
Query: 303 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGV 482
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 483 KQLIVGVNKMDCTEPPYSEPRFEEI 557
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 225 LDKLKAERERGITIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGERILQI 214
M +++ N+ VI HVD GKST T L+ K G I K +F ++ ER + I
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITI 70
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 261 TIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGERILQI 214
M +++ N+ VI HVD GKST T L+ K G I K +F ++ ER + I
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITI 70
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 261 TIDIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +3
Query: 228 DKLKAERERGITI-----DIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 392
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
Query: 393 VAAGTG 410
V A G
Sbjct: 232 VDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +3
Query: 228 DKLKAERERGITI-----DIAXWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 392
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
Query: 393 VAAGTG 410
V A G
Sbjct: 107 VDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -3
Query: 508 LFTPTMSCFTPRVKASKACSRV*PFLXIPASNSPVPAATMSTA 380
LF PT+SC + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 23 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 133
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.1 bits (67), Expect = 0.67
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +3
Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQL 491
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGL--EPQTIE-SLKLLIKGKTPF 604
Query: 492 IVGVNKMDCTEPPYSEPR 545
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 23 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 133
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 68 INIVVIGHVDSGKSTTT 118
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 420 AGIXKNGQTREHALLAFTLGVKQLIVGVNKMDCTEPPYSEPRFEEIKKEVF 572
AGI KN Q +++ L + VK+ + +K DC + Y PRF + K ++
Sbjct: 294 AGI-KNMQDKQN-LYVYEKLVKKCLFHPSKGDCPQDSYDLPRFSTVLKALY 342
>Z72505-6|CAA96613.2| 358|Caenorhabditis elegans Hypothetical
protein C50C10.7 protein.
Length = 358
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 119 GHLIYKCGGIDKRTIEKFEKEAQEMGERILQICLGI 226
GH IY+ G ID + +K+ ++ IL C GI
Sbjct: 111 GHFIYRYGAIDSQFYQKYLSGFKQSLLYILPFCYGI 146
>AF216966-1|AAF23508.1| 358|Caenorhabditis elegans seven
transmembrane receptor 2 protein.
Length = 358
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 119 GHLIYKCGGIDKRTIEKFEKEAQEMGERILQICLGI 226
GH IY+ G ID + +K+ ++ IL C GI
Sbjct: 111 GHFIYRYGAIDSQFYQKYLSGFKQSLLYILPFCYGI 146
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 306 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 401
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,965
Number of Sequences: 27780
Number of extensions: 294521
Number of successful extensions: 903
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -