Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2173
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    31   0.19 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.1  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    25   7.1  

>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 87  NSY-NKYLAFQRQ-VGSYFNFVTFSFFSKNNIVNIYIKLSIL 206
           N+Y + YLA Q   V S+F+F  +S F  NN+  I+I  +IL
Sbjct: 275 NAYVSMYLAKQTDFVRSFFHFDPYSLFISNNLEEIHINWNIL 316


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 117 RQVGSY-FNFVTFSFFSKNNIVNIYIKLSILYIGNF 221
           R + S+  + +  SFFS  N +N + K S L + NF
Sbjct: 315 RSIRSFNLDLLNSSFFSLKNFLNFFGKRSSLSLANF 350


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 90  SYNKYLAFQRQV-GSYFNFVTFSFFSKNNIVN 182
           S+ +   F RQ+ G+++ F  F F+  N IVN
Sbjct: 15  SFAQKSLFNRQITGNHWIFARFKFYPLNKIVN 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,157
Number of Sequences: 5004
Number of extensions: 40353
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)