Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2172
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.69 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.69 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.69 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.69 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.92 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   6.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   6.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   6.5  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAYTHAPEGFNEFY 874


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAYTHAPEGFNEFY 874


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAYTHAPEGFNEFY 874


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAYTHAPEGFNEFY 874


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 414 MAGRFWKNLAVFCV 455
           M  +FW NLA+FC+
Sbjct: 1   MFAKFWVNLALFCL 14


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 553 TAHSRTASEPS*TRRLRGTTLKYCCWKAAVVASTQKTAKFFQNRPAILISIFINAI 386
           TAHS   +  S   R +G +L     K A  ++T +    F N+P I   IF NA+
Sbjct: 285 TAHSTRHAATSAAAR-KGISLDLIR-KTAGWSATSRVFATFYNKPLIHKEIFANAV 338


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 577 QGEDRWLCTLLLQRGYRVEYSAASDAFTHCPEGFNEFY 614


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 810 QGEDRWLCTLLLQRGYRVEYSAASDAFTHCPEGFNEFY 847


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 671 QPEDRQ-CHIGRRRGIPVPSRARSDAQSHKSQRFDHRY 781
           Q EDR  C +  +RG  V   A SDA +H  + F+  Y
Sbjct: 810 QGEDRWLCTLLLQRGYRVEYSAASDAFTHCPEGFNEFY 847


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 603 QVQIHLWPTAPGLLDWLQRTRGPPLSPLEPAGFEEPP 493
           Q Q+   P A    +W+++T        EPA F + P
Sbjct: 111 QTQVARPPPARSPYEWIKKTSYQSQPNPEPADFADAP 147


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 603 QVQIHLWPTAPGLLDWLQRTRGPPLSPLEPAGFEEPP 493
           Q Q+   P A    +W+++T        EPA F + P
Sbjct: 111 QTQVARPPPARSPYEWIKKTSYQSQPNPEPADFADAP 147


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 595  NPSLAHCTWPARLATAHSRTASEPS 521
            NP    C WP  +      TA+ P+
Sbjct: 954  NPDQNVCDWPENVEGCMQHTAAPPT 978


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 527 ALLNPQASRNHPEVLLLEGCC 465
           AL  P++  NHPE  L +  C
Sbjct: 33  ALEAPKSPENHPETELSDSDC 53


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 543 RGPPLSPLEP 514
           RGPP +PL+P
Sbjct: 58  RGPPRTPLQP 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,887
Number of Sequences: 336
Number of extensions: 4423
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)