Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2172
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    27   3.1  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   5.4  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   5.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   9.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.4  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   9.4  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   9.4  

>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 554 YSALEDRL*ALLNPQASRNHPEVLLLEGC 468
           Y   ++R+  LL PQ   NHPE++   GC
Sbjct: 338 YDYYKERI--LLRPQVISNHPEIIRRLGC 364


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -3

Query: 652 SPNIVYLGYPGITDEKPSANPSLAHCTWPARLATAHSRTASEPS*TRRLRGTTLKYCCWK 473
           SP++  +  P ++  K + +P+          AT+  RTA+E    RR    + ++   K
Sbjct: 229 SPDLASVSSPSLSSYKGAQSPN---ANSKRTKATSAIRTAAEEDKRRRNTAASARFRIKK 285

Query: 472 AAVVASTQKTAKFFQNRPAIL 410
                  ++TAK    + AIL
Sbjct: 286 KLKEQQLERTAKELTEKVAIL 306


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 631 GYPGITDEKPSANPSLAHCTWPARLATAHSRTASEPS 521
           GY      KPS+  +      P  +AT H RT+SEP+
Sbjct: 395 GYRMFGHSKPSSYKASGPVR-PPNMATGHMRTSSEPT 430


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 784 EITVIEALALMTLCI*AGPTWHWYSASSSNV 692
           +++ +E LALM L + A   WH+ S  S ++
Sbjct: 94  DLSYLEILALMDLIVSAEKEWHYGSPLSESL 124


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 168  TLTLQPVHDPTTIGNRVSIKKKPV 97
            T+T +P++D   I N  S+K+K V
Sbjct: 1545 TITAKPLNDEKAINNENSVKQKTV 1568


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 421 VGFGRTWLFFACWPRQQPSSNSTS 492
           +GF ++WL+F  W    PS  S +
Sbjct: 146 IGFAQSWLYFWIWLTVLPSEISAA 169


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 560 IGYSALEDRL*ALLNPQASRNHPEVL 483
           +G  +L+D L  +LNPQ     PE L
Sbjct: 1   MGKVSLKDELAGMLNPQPQERDPEAL 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,598
Number of Sequences: 5004
Number of extensions: 72396
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)