Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2172
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0394 - 3487360-3488229                                           29   5.6  
07_03_0349 - 17051786-17052376                                         29   5.6  
12_01_0276 - 2012205-2012279,2012362-2012566,2012725-2013002           28   9.8  
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155           28   9.8  
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270...    28   9.8  
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594...    28   9.8  
03_05_0085 - 20638769-20639150,20640054-20640286                       28   9.8  
02_04_0213 + 20974712-20975413                                         28   9.8  

>08_01_0394 - 3487360-3488229
          Length = 289

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 458 GHDSSLPATVLQGGSSKPAGSRGLRGGPRVRCSQSSRP 571
           GHD   P +   GG S  AG  G+ GG  V      RP
Sbjct: 32  GHDDLSPGSGGGGGPSSTAGGAGIGGGEVVARRPRGRP 69


>07_03_0349 - 17051786-17052376
          Length = 196

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 600 VQIHLWPTAPGLLDWLQRTRGPPLSPLEPA 511
           +++H WP  P LL     T G PLSP   A
Sbjct: 82  LRLHGWPIMPPLLGVYDFTAGSPLSPTSGA 111


>12_01_0276 - 2012205-2012279,2012362-2012566,2012725-2013002
          Length = 185

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 419 RSVLEELGCFLRAGHDSSLPATVLQGGSSKPAGSRGLRGGPRVRCSQSSRPGAVG 583
           R+ + +LG  L +    +L  +V  G   +PA   G+ G   V  S ++R GA G
Sbjct: 65  RANVVQLGYILGSQFALNLDPSVSPGSVIRPANQNGMMGSQDVVYSAAARHGASG 119


>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
          Length = 361

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 591 HLWPTAPGLLDWLQRTRG-PPLSPLEPAGF 505
           HLW +APGL   + R  G PP +  EP GF
Sbjct: 51  HLWRSAPGLR--IVRAAGRPPATVEEPQGF 78


>06_03_0007 -
           15325720-15325739,15326236-15326383,15326512-15327025,
           15327077-15327507
          Length = 370

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 498 PP*STVAGRLLSWPARKKQPSSSKTDR 418
           P  S V G  L WPARKK  S+ K+ +
Sbjct: 190 PVKSPVPGMKLEWPARKKPSSALKSKK 216


>03_05_0489 -
           24858483-24858637,24858811-24858921,24859013-24859421,
           24859746-24859800,24860042-24860318,24860442-24860562,
           24860831-24861438,24861552-24861741
          Length = 641

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 440 GCFLRAGHDSSLPATVLQGGSSK---PAGSRGLRGGPRVR---CSQSSRPGAVGQR 589
           G FL+  +D  L +    GG +    P G    RGG RVR   CS ++ PG   QR
Sbjct: 50  GAFLQGDNDELLTSRTGHGGGNGGAFPGGLSSGRGG-RVRQRSCSVAAAPGRQSQR 104


>03_05_0085 - 20638769-20639150,20640054-20640286
          Length = 204

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 456 LATTAAFQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQWAKDGFALGFS 611
           +A TA+  + Y R   R  R+QE  E + +  + +LA +   +  GFA G S
Sbjct: 1   MAATASAAEGYER--EREARIQENMERMQKLGIRDLANRFNQSATGFAGGGS 50


>02_04_0213 + 20974712-20975413
          Length = 233

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 500 SSKPAGSRGLRGGPRVRCSQSSRPGAVGQ 586
           SS P G  GL G        SSR GAVGQ
Sbjct: 150 SSPPGGGGGLYGCAPTMLRASSRAGAVGQ 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,494,626
Number of Sequences: 37544
Number of extensions: 502059
Number of successful extensions: 1402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)