Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2172
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    38   1e-04
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    38   1e-04
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   7.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   7.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   7.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 516 VQEGSEAVLECAVA-NLAGQVQWAKDGFALGFSSVIPGYPRYTMFGDRRNGVYNLRIVNV 692
           +Q G    L+C+ A N   QV WA DGFAL  +         T+ GD    + ++ I +V
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGD---VISHVNISHV 489

Query: 693 TLEDDAEYQC 722
            +ED  EY C
Sbjct: 490 MVEDGGEYSC 499



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 486 YFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDG 593
           YF    R + V++G  A L C V  +    V W K G
Sbjct: 809 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGG 845


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 516 VQEGSEAVLECAVA-NLAGQVQWAKDGFALGFSSVIPGYPRYTMFGDRRNGVYNLRIVNV 692
           +Q G    L+C+ A N   QV WA DGFAL  +         T+ GD    + ++ I +V
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGD---VISHVNISHV 489

Query: 693 TLEDDAEYQC 722
            +ED  EY C
Sbjct: 490 MVEDGGEYSC 499



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 486 YFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDG 593
           YF    R + V++G  A L C V  +    V W K G
Sbjct: 805 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGG 841



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +3

Query: 525 GSEAVLECAVA--NLAGQVQWAKDGFALG 605
           G    L C+V   +L   + W KDG A+G
Sbjct: 625 GERTTLTCSVTRGDLPLSISWLKDGRAMG 653


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 166 TNTATCSRSHDNRKSGLY*KKTGFFFSH 83
           TN+ TC R  D  +     KK+G   SH
Sbjct: 263 TNSVTCDRPSDEAEPSSTSKKSGIVRSH 290


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
 Frame = +3

Query: 441 AVFCVLATTAAFQQQYFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDGFALGFSSV 617
           +V  VL  TA    +   + P +  +  G  A   C V  N    V W KDG  LG    
Sbjct: 297 SVETVLTVTAPLGAE---IEPSTQTIDFGRPATFTCNVRGNPIKTVSWLKDGKPLGLEEA 353

Query: 618 IPGYPRYTMFGDRRNGVYNLRIVNVTLEDDAEYQCQV 728
           +                  LRI +V  ED   YQC V
Sbjct: 354 V------------------LRIESVKKEDKGMYQCFV 372


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 427  FGRTWLFFACWPR 465
            +G+ WLFF C  R
Sbjct: 999  YGKVWLFFGCRQR 1011


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 208 HREYNNLNINEYRNTN 161
           +  YNN N N Y N N
Sbjct: 91  YSNYNNYNNNNYNNNN 106


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 208 HREYNNLNINEYRNTN 161
           +  YNN N N Y N N
Sbjct: 91  YSNYNNYNNNNYNNNN 106


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 208 HREYNNLNINEYRNTN 161
           +  YNN N N Y N N
Sbjct: 91  YSNYNNYNNNNYNNNN 106


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 208 HREYNNLNINEYRNTN 161
           +  YNN N N Y N N
Sbjct: 91  YSNYNNYNNNNYNNNN 106


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 208 HREYNNLNINEYRNTN 161
           +  YNN N N Y N N
Sbjct: 327 YNNYNNYNNNNYNNYN 342


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 628 YPGITDEKPSANPSLAHCTWPARLAT 551
           YP  T EK + + + ++ TWP RL T
Sbjct: 379 YPNGT-EKMTLSVNESNITWPGRLQT 403



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 782 DNGDRSVGSYDFVHL 738
           DNGDR    YD +++
Sbjct: 351 DNGDRIFAEYDIINI 365


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 578 VGQRWICTWFLISDPGVPEVHDVR*SSERR 667
           +G  +I  WF+      P  HD     ER+
Sbjct: 4   LGVLFIAAWFIACTHSFPGAHDEDSKEERK 33


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 578 VGQRWICTWFLISDPGVPEVHDVR*SSERR 667
           +G  +I  WF+      P  HD     ER+
Sbjct: 4   LGVLFIAAWFIACTHSFPGAHDEDSKEERK 33


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 578 VGQRWICTWFLISDPGVPEVHDVR*SSERR 667
           +G  +I  WF+      P  HD     ER+
Sbjct: 4   LGVLFIAAWFIACTHSFPGAHDEDSKEERK 33


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 174 IETLTLQPVHDPTTIGNRVSIKKKPVFFSLIKISIHKH 61
           + T T  P  +P+T  +    +K    F + K  +H+H
Sbjct: 379 VPTTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEH 416


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 513 RVQEGSEAVLECAVAN 560
           R  +GS+ +L+CA +N
Sbjct: 760 RSPQGSQGLLQCATSN 775


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,802
Number of Sequences: 438
Number of extensions: 5212
Number of successful extensions: 26
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)