Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2171
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    27   1.4  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    25   3.1  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   4.1  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.1  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   9.5  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 136 LFKDCDHIGARCLPRNGRSSRILIIRNFEFQQIKFSQRAPKTEE 5
           L KD +    R LP +    ++L +++F  + ++FS +  KTEE
Sbjct: 352 LLKDLEREDPRVLPIH--KMQLLYVQSFFLEFMRFSSKPKKTEE 393


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 259 RIHNRKNLIIHKSKNKLCTINYSSNTYSLINAC 161
           RI    +  +HK K  +  +NY   T   +N C
Sbjct: 283 RIIKEMSNCVHKQKGNVIWLNYDEPTKDFLNLC 315


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 85  RSSRILIIRNFEFQQIKFSQRAPKTE 8
           +SSRI +I   EF+QI F+  +P+ +
Sbjct: 116 QSSRIKLITEEEFKQICFNSSSPERD 141


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 312 FLLPLNLFWYLTTPY 356
           FLLP+++FW+  T Y
Sbjct: 424 FLLPISMFWFAWTCY 438


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 94  RNGRSSRILIIRNFEFQQIKFSQRAPKTEE 5
           R+ R+SR+  I+N +  QIKFS      E+
Sbjct: 660 RDYRNSRLDAIKNVKTYQIKFSDLQESLEK 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,075
Number of Sequences: 5004
Number of extensions: 24339
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)