Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2171
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    27   5.3  
08_01_0909 + 8958727-8958917,8959527-8959611,8960628-8960684,896...    26   9.2  

>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 127 DCDHIGARCLPRNGRSSRILIIRNFEFQQIKFSQRAPKTEER 2
           +CDH   RC+P NG +  +    N + +   F  +  + E R
Sbjct: 307 ECDHSDERCMPSNGGACPVKTEVNGKQETKGFESKGVQCEPR 348


>08_01_0909 +
           8958727-8958917,8959527-8959611,8960628-8960684,
           8961311-8961437,8961602-8961973,8962907-8962915,
           8963196-8963327,8963404-8963609,8963697-8963756
          Length = 412

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 259 RIHNRKNLIIHKSKNKLCTINYSSNTYSLINACA 158
           +++++++L   K +NK C +  S  TYS+   CA
Sbjct: 266 KLYSKRSLQT-KQENKACRVAKSEETYSMSTNCA 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,626,555
Number of Sequences: 37544
Number of extensions: 118906
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)