Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2170
         (786 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.093
UniRef50_Q171Y0 Cluster: DNA-directed RNA polymerase III, 62-kS-...    34   4.6  
UniRef50_Q4FNV5 Cluster: Potential Sulfotransferase domain; n=2;...    33   6.1  
UniRef50_Q4YA65 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.5 bits (88), Expect = 0.093
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 14  WWYLPVRTHKRSYHQ 58
           WWYLP RTHKRSYH+
Sbjct: 571 WWYLPARTHKRSYHR 585


>UniRef50_Q171Y0 Cluster: DNA-directed RNA polymerase III,
           62-kS-subunit, putative; n=2; Culicidae|Rep:
           DNA-directed RNA polymerase III, 62-kS-subunit, putative
           - Aedes aegypti (Yellowfever mosquito)
          Length = 507

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -1

Query: 345 HWSMSISLFH-EWRPRNSFHLGKKL--RNVNSCIKITITLT*SRTSQYRLMV*QYQHKAL 175
           HW +++  FH ++R     +  ++L   +   C+K  + L  SRT  + ++        L
Sbjct: 207 HWLVNLEKFHLDFRDSIMINAAERLIDSSAGECLKFLLQLMYSRTKPWEMVSNPIPMVEL 266

Query: 174 FKPCIKKENFIEVKKYH*EYTIAELHSICIAS 79
            + C KK N +E+ K+  +Y +A + S+   S
Sbjct: 267 KQLCEKKSNNLEMIKFLDQY-VAVIESVNFVS 297


>UniRef50_Q4FNV5 Cluster: Potential Sulfotransferase domain; n=2;
           Candidatus Pelagibacter ubique|Rep: Potential
           Sulfotransferase domain - Pelagibacter ubique
          Length = 281

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -2

Query: 404 KLCNRLKT*PFNNIQFKQLNIGA*VSLYSMNGGREIHF 291
           K  N +KT  F+N++ K+LN G   S+YS   G++I+F
Sbjct: 207 KFYNSIKTTSFSNLKNKELNEGFEESVYSKKTGKKINF 244


>UniRef50_Q4YA65 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 44

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 337 HEYLFIP*MAAEKFISFRKKIT*CQQLYKNNNNSDVITNITIS 209
           H Y++        F S RKK   C ++ KNNN     TNITI+
Sbjct: 2   HAYIYTYICQTTVFNSLRKKCITCNKINKNNNKYFFYTNITIN 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,036,048
Number of Sequences: 1657284
Number of extensions: 14304021
Number of successful extensions: 29587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29556
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)