Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2170
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   0.57 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   4.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.3  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   9.3  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 307 AEKFISFRKKIT*CQQLYKNNNNSDVITN 221
           AEK+  +R  +  C QLY++N  +D + N
Sbjct: 789 AEKYSDYRSLVELCYQLYEDNELTDALNN 817


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/80 (23%), Positives = 30/80 (37%)
 Frame = +1

Query: 361 WMLLKGYVFNLLHSFYRGL*AWRPNQGIP*RKRKSNTPHSVYHVARVQHNHTLRLFRLCL 540
           W +L   +F++ +SFY G   W P + I      SN P  +Y       + +        
Sbjct: 670 WYMLISTMFSIAYSFYMGSAIWTPWRVI-----FSNLPRRIYFTLLAYKDLSTEFKPKIY 724

Query: 541 *MSAWRDVALHAYHEVCPSL 600
               W  + +  Y E   SL
Sbjct: 725 VGQIWNSIMISMYREHLLSL 744


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 361 WMLLKGYVFNLLHSFYRGL*AWRPNQGI 444
           W +L   VF++  SF+ G+  W P + I
Sbjct: 730 WYILVNTVFSVARSFFLGISIWTPWRNI 757


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 IFFLNEMNFSAAIHGIKRYSCSNV*LFK 359
           IF  +EMN ++ I+GI+   C  + +FK
Sbjct: 262 IFLSDEMNHASMINGIRNSRCEKI-IFK 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,854
Number of Sequences: 5004
Number of extensions: 62355
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)