Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2170
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    31   0.71 
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    29   3.8  
AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm rece...    29   3.8  
U42832-1|AAV28357.1|  442|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +1

Query: 529 RLCL*MSAW-RDVALHAYHEVC 591
           R+C  +SAW RD++L +YHE+C
Sbjct: 640 RVCAILSAWQRDISLPSYHEMC 661


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 9   WGGGTCPCGLTRGPTTSDKTYLPLKQC 89
           +GG  C C  T  P+T   T LP+  C
Sbjct: 24  FGGSNCGCSCTPPPSTCPTTCLPIMTC 50


>AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 170 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 340 PMFSCLNWMLLKGYVF 387
           P+F CLNW  + GY F
Sbjct: 141 PIFGCLNWTFIAGYFF 156


>U42832-1|AAV28357.1|  442|Caenorhabditis elegans Hypothetical
           protein F01E11.3 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 416 FERGDRIKEFRNENENRTPPTPST 487
           ++ GDR+  F N N+  + PTPS+
Sbjct: 402 YQAGDRVAAFWNNNQMHSHPTPSS 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,784,181
Number of Sequences: 27780
Number of extensions: 351810
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)