Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2168
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.6  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    27   3.6  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   4.8  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   8.3  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 601 LGIPSVHPNLTCHGLSHSLRPERALIAKALKSRIIESRRSNRQGHH 464
           + + S   N+T +      RP RA    +    +  S +SNR GHH
Sbjct: 307 INLASAATNVTGYVSETDSRPNRANSLDSAVLLVQSSNKSNRNGHH 352


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +2

Query: 239 DTGSGSFYDLRHFTLGVSPNIARWDYHATHVNQLYLLAGLDDDPILMNTAKRWEGYMQGK 418
           DTG  + Y+  + +L  +P  +   Y  T+      LAG DDD  L+N   R  G +  K
Sbjct: 75  DTGMNTEYNDDNSSLVNTPRDST-TYAETNSPNTEKLAGRDDDRSLLNLIDR--GEIDSK 131

Query: 419 RAAH 430
           R  H
Sbjct: 132 RQRH 135


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 23  SHAGGVKALWMDKFVWYEEYPTKPPLFVLNGFIYTLLGLYDLHVIEGENSMSLAKKMF 196
           S A  +K  W  + +WYE     PP F    +   ++ LYD + ++      L K M+
Sbjct: 12  SFAAEMKKPWTAESLWYETVAKHPPTF---QYARRIVPLYDPNKVKSRGK-RLRKSMY 65


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 471 VTTKFSRELPTF--QLCAALLPCMYPSHLLAVFISIGSSSNPAKR 343
           V T F    P     LC A+  C Y  +L +  I+I SS  P ++
Sbjct: 377 VLTSFGHRTPLILISLCLAMTGCSYGMNLTSTLIAIISSLAPEEQ 421


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 56  DKFVWYEEYPTKPPLFVLNGFIYTLLGLYDLHVIEGENS 172
           D ++ Y+ Y  K P FVL       LG Y   V+  +NS
Sbjct: 231 DLWLLYQSYAPKHPYFVLFAAALKGLGGYISTVVASQNS 269


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 224 LLPLFDTGSGSFYDLRHFTLGVSPNIARWDYHATHVN 334
           L P   T  GS   + H++L   P +++  YH  H N
Sbjct: 303 LYPNLLTTGGSDGSVNHYSLDEPPLLSQQKYHEKHPN 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,697
Number of Sequences: 5004
Number of extensions: 65117
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)