Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2168
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1069 + 23743031-23744062                                         29   5.0  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   8.7  
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139...    28   8.7  

>07_03_1069 + 23743031-23744062
          Length = 343

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 145 VVETEERVDE-AV*NEKRRLRWVFFVPNKLVHPQGLDPTGVTRHVQHV 5
           VVE E+  +E  V   +R L      P KL+ P+ + P G T HV+ V
Sbjct: 143 VVEVEDEDEERGVVLVERDLLRKLLEPRKLLEPRAVRPVGSTIHVESV 190


>07_01_0242 +
           1775704-1776797,1776839-1777759,1778312-1778412,
           1778770-1778900,1779530-1779788,1779823-1780098,
           1780100-1781352
          Length = 1344

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 595 IPSVHPNLTCHGLSHSLRPERALIAKALKS 506
           I S++PNL+ HG++  + P + L A A +S
Sbjct: 106 ILSIYPNLSSHGMAFFVSPTKNLSAAAPRS 135


>06_01_0179 -
           1388602-1389572,1390060-1390129,1390346-1390439,
           1390587-1390687,1391152-1391220,1391328-1391482,
           1392193-1392241,1392611-1392739,1392825-1393580,
           1394711-1394902
          Length = 861

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 169 LHVSSQEDV*RRNDVTQNSITTVRHRQR-KLLRPEAFHVGSQPQYSQVGLPRHPR 330
           LH+  Q++   +  + Q+ +  ++ +Q+ ++L+P      SQ Q SQVG+PR P+
Sbjct: 226 LHLQGQQNPQIQALIHQHKLAQIQQQQQHQMLQPF-----SQIQQSQVGIPRQPQ 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,606
Number of Sequences: 37544
Number of extensions: 430199
Number of successful extensions: 988
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)