Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2168
         (725 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-198|AAM70806.1|  614|Drosophila melanogaster CG3194-PA ...   196   3e-50
AE014134-3171|AAS64724.1|  646|Drosophila melanogaster CG10481-P...    29   8.5  
AE014134-3170|AAF53851.2|  538|Drosophila melanogaster CG10481-P...    29   8.5  

>AE013599-198|AAM70806.1|  614|Drosophila melanogaster CG3194-PA
           protein.
          Length = 614

 Score =  196 bits (477), Expect = 3e-50
 Identities = 90/139 (64%), Positives = 106/139 (76%)
 Frame = +2

Query: 17  VPSHAGGVKALWMDKFVWYEEYPTKPPLFVLNGFIYTLLGLYDLHVIEGENSMSLAKKMF 196
           V S  GGV A +MDKF WYEEYPT PP +VLNGFIY+LLGLYDL+          A K+F
Sbjct: 476 VYSRDGGVLAQFMDKFYWYEEYPTTPPSYVLNGFIYSLLGLYDLNSTAPGKIAREAGKLF 535

Query: 197 DDGMTSLKTLLPLFDTGSGSFYDLRHFTLGVSPNIARWDYHATHVNQLYLLAGLDDDPIL 376
             GM SLK +L LFDTGSG+ YDLRH +LGV+PN+ARWDYHATHVNQL LLA +D DP++
Sbjct: 536 AQGMHSLKKMLLLFDTGSGTSYDLRHLSLGVAPNLARWDYHATHVNQLLLLATIDSDPLI 595

Query: 377 MNTAKRWEGYMQGKRAAHN 433
             TA+RW+GYM G+RA HN
Sbjct: 596 AQTAERWKGYMFGRRAKHN 614


>AE014134-3171|AAS64724.1|  646|Drosophila melanogaster CG10481-PB,
           isoform B protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 62  FVWYEEYPTKPPLFV---LNGFIYTLLGLYDLHVIEGENSMSLAK 187
           F WYE+Y  K  L +   L+  I T   +Y  ++  G+ S ++AK
Sbjct: 171 FAWYEKYVLKSTLAITLQLDRMISTTENMYTDYLANGDRSEAMAK 215


>AE014134-3170|AAF53851.2|  538|Drosophila melanogaster CG10481-PA,
           isoform A protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 62  FVWYEEYPTKPPLFV---LNGFIYTLLGLYDLHVIEGENSMSLAK 187
           F WYE+Y  K  L +   L+  I T   +Y  ++  G+ S ++AK
Sbjct: 171 FAWYEKYVLKSTLAITLQLDRMISTTENMYTDYLANGDRSEAMAK 215


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,157,930
Number of Sequences: 53049
Number of extensions: 701361
Number of successful extensions: 1747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)