Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2168
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-8|CAA84297.2|  616|Caenorhabditis elegans Hypothetical pr...   161   6e-40
AY552607-1|AAS89254.1|  616|Caenorhabditis elegans heparan sulfa...   161   6e-40
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    30   1.9  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    28   7.8  

>Z34533-8|CAA84297.2|  616|Caenorhabditis elegans Hypothetical
           protein B0285.5 protein.
          Length = 616

 Score =  161 bits (390), Expect = 6e-40
 Identities = 78/153 (50%), Positives = 102/153 (66%), Gaps = 9/153 (5%)
 Frame = +2

Query: 2   LYVLDVPSHAGGVKALWMDKFVWYEEYPTKPPLFVLNGFIYTLLGLYDLHVIE---GENS 172
           L +  + S  GGV+  +    +WYEEYPT P  FVLNGF+Y+L+GLYDL  +E    EN 
Sbjct: 465 LKLFKINSSDGGVRGEFFGN-IWYEEYPTTPGSFVLNGFLYSLIGLYDLSQLELMIDEND 523

Query: 173 MSL------AKKMFDDGMTSLKTLLPLFDTGSGSFYDLRHFTLGVSPNIARWDYHATHVN 334
            ++      A++++  G+ SLK LLPL+DTGSG+ YDLRH  LG +PN+ARWDYHA HV 
Sbjct: 524 ETMRAKIQEAQELYSAGVRSLKQLLPLYDTGSGTIYDLRHVALGTAPNLARWDYHAVHVY 583

Query: 335 QLYLLAGLDDDPILMNTAKRWEGYMQGKRAAHN 433
            L  +AG++ D +L  TA RW GY  GKRA HN
Sbjct: 584 LLKWIAGIEKDEVLSKTADRWIGYAYGKRAKHN 616


>AY552607-1|AAS89254.1|  616|Caenorhabditis elegans heparan sulfate
           C5-glucuronyl epimeraseprotein.
          Length = 616

 Score =  161 bits (390), Expect = 6e-40
 Identities = 78/153 (50%), Positives = 102/153 (66%), Gaps = 9/153 (5%)
 Frame = +2

Query: 2   LYVLDVPSHAGGVKALWMDKFVWYEEYPTKPPLFVLNGFIYTLLGLYDLHVIE---GENS 172
           L +  + S  GGV+  +    +WYEEYPT P  FVLNGF+Y+L+GLYDL  +E    EN 
Sbjct: 465 LKLFKINSSDGGVRGEFFGN-IWYEEYPTTPGSFVLNGFLYSLIGLYDLSQLELMIDEND 523

Query: 173 MSL------AKKMFDDGMTSLKTLLPLFDTGSGSFYDLRHFTLGVSPNIARWDYHATHVN 334
            ++      A++++  G+ SLK LLPL+DTGSG+ YDLRH  LG +PN+ARWDYHA HV 
Sbjct: 524 ETMRAKIQEAQELYSAGVRSLKQLLPLYDTGSGTIYDLRHVALGTAPNLARWDYHAVHVY 583

Query: 335 QLYLLAGLDDDPILMNTAKRWEGYMQGKRAAHN 433
            L  +AG++ D +L  TA RW GY  GKRA HN
Sbjct: 584 LLKWIAGIEKDEVLSKTADRWIGYAYGKRAKHN 616


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +2

Query: 200 DGMTSLKTLLPLFDTGSGSFYDLRHFTLGVSPNIARWDYHATHVNQLYLLAGLDDDP 370
           + M  +K L+P F T    F +  HF LGV  N         HVN + L A    DP
Sbjct: 306 NNMADVKELIPEFFTLPEMFTNTNHFDLGVKQN-------GIHVNDVLLPAWCHGDP 355


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +2

Query: 200 DGMTSLKTLLPLFDTGSGSFYDLRHFTLGVSPNIARWDYHATHVNQLYLLAGLDDDP 370
           + M  +K L+P F T    F +  HF LGV  N         HVN + L A    DP
Sbjct: 306 NNMADVKELIPEFFTLPEMFTNTNHFDLGVKQN-------GIHVNDVLLPAWCHGDP 355


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 116 FIYTLLGLYDLHVIEGENSMSLAKKMFDDGMTSLKTLLPLFDTGSGSFYDLRH 274
           F    L L   H   G NS+ L + +  +  TSL T   LF+ GS   +   H
Sbjct: 421 FFAACLALAMKHEASGRNSLFLIEAVSAEKKTSLSTFQRLFNLGSVPDHSASH 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,272
Number of Sequences: 27780
Number of extensions: 355768
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)