Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2168
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.2  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.9  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   3.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   5.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 92  PPLFVLNGFIYTLLGLYDLHVIEGENSMSLAKKMFDDGMTSLKTL 226
           P + + NG  + +LG  +   I GEN   +A+K+     + LK +
Sbjct: 79  PAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGLKVI 123


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+  +PEA    ++P Y     P HPR
Sbjct: 30  RLRREAKPEAEPGNNRPVYIPQPRPPHPR 58



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+  +PEA    ++P Y     P HPR
Sbjct: 254 RLRREAKPEAKPGNNRPVYIPQPRPPHPR 282



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 58  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 86



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 114 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 142



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 170 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 198



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 198 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 226



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 226 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 254


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+  +PEA    ++P Y     P HPR
Sbjct: 2   RLRREAKPEAEPGNNRPVYIPQPRPPHPR 30



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+  +PEA    ++P Y     P HPR
Sbjct: 142 RLRREAKPEAEPGNNRPVYIPQPRPPHPR 170



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 30  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 58



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 58  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 86



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 86  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 114



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 114 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 142



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 170 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 198


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+  +PEA    ++P Y     P HPR
Sbjct: 31  RLRREAKPEAEPGNNRPIYIPQPRPPHPR 59


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 31  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 59



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 59  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 87



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 87  RLRREAEPEAEPGNNRPVYIPQPRPPHPR 115



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 244 RQRKLLRPEAFHVGSQPQYSQVGLPRHPR 330
           R R+   PEA    ++P Y     P HPR
Sbjct: 115 RLRREAEPEAEPGNNRPVYIPQPRPPHPR 143


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 103 EKRRLRWVFFVPN 65
           +K RLRW+  +PN
Sbjct: 352 KKTRLRWMMEIPN 364


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  WYEEYPTKPPLFVLNGFIYTLLG 136
           WY+  P  P    + GF+  +LG
Sbjct: 41  WYQYPPLNPMWHGILGFVIGMLG 63


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 74  EEYPTKPPLFVLNGFIYTLLGLYDLHVIEGENSMSLAKKMFD 199
           E+   +  +FV   +I + L + D    EG++ ++L  + FD
Sbjct: 28  EDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFD 69


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  WYEEYPTKPPLFVLNGFIYTLLG 136
           WY+  P  P    + GF+  +LG
Sbjct: 7   WYQYPPLNPMWHGILGFVIGMLG 29


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 384 RPKDGRDTCKVKERRITEMWVVLWKIL 464
           +P +G D    K R ITE+ ++  +++
Sbjct: 363 QPSEGEDISDYKFRHITEITILTVQLI 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,271
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)