Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2167
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.22 
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   2.7  
SPCC569.02c |||S. pombe specific UPF0321 family protein 2|Schizo...    26   3.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   6.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   8.3  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 82  TFHSHILSKTIAFTT*INQL---KHFFVFFLYVYKNKIKIF 195
           +F SH+LS TIA T  +N     K   +  L  Y NK K+F
Sbjct: 267 SFLSHLLSLTIAVTALVNGFSIAKSLALMLLLTYSNKEKVF 307


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 9   VCRWMCCTFHFLCSN*IIVSENKLDVP 89
           V RW   TFH L  N +++  N + +P
Sbjct: 609 VLRWKERTFHALLGNSLLLEHNNVSIP 635


>SPCC569.02c |||S. pombe specific UPF0321 family protein
          2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 43 CAVTKLLLAKINLTF 87
          CA  KL+LA++NLTF
Sbjct: 9  CAFIKLVLAEVNLTF 23


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 7   LYVVGCVVHFTFCAVTKLLLAKINLTFHSHILSKTIAFTT*INQLKHFFVF 159
           L VVG +   TF +      A I   F + +LS +  F+T   +L    +F
Sbjct: 450 LGVVGIIAVLTFISFLDTSFATILAAFGTTLLSLSFVFSTSAQELMSSIIF 500


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 13   VVGCVVHFTFCAVTKLLLAKINLTFHSHILSKTIAFTT*INQLKHFFVFFLYVYK 177
            V G ++ F+F      +    N  F +++L  T+A T+ +N L+  F++F  +Y+
Sbjct: 1100 VAGLIIGFSFYKQGVGVEETQNKMFSAYML--TVASTSTMNGLQPKFIYFRSIYE 1152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,153
Number of Sequences: 5004
Number of extensions: 35183
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)