Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2167
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    27   9.9  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -2

Query: 404 LTFFVYNTVSKINIHCRSLPTILLKVGLIYFDAQFSITNSI 282
           L FF+Y+T++ ++I   +L  I  K+  + F  QF++  ++
Sbjct: 492 LNFFIYSTINPVSIFISNL--ISKKIIFLIFQVQFALYKTL 530


>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 368 LSYLLCCKRKMLISLKLYSS 427
           LSY+LC KR M   LKL+ S
Sbjct: 275 LSYILCNKRNMSSFLKLFKS 294


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
 Frame = -2

Query: 476 MASLATTKTISLEHNYNWNIILRKLTF-FVYNTVSKINIHCRSLPTILL--------KVG 324
           M SL  T  + +  ++   I+  K+ F  VY    KI      LP+  L        K  
Sbjct: 146 MVSLLQTPRVPIGASFLAAIVFAKIGFEVVYRLPYKILFEDDRLPSFALTLTHESFRKFM 205

Query: 323 LIYFDAQFSITNSIFILIHCYSLI 252
           + Y D   +    IF +++CYS++
Sbjct: 206 IYYIDVIVATMAIIFTIVNCYSML 229


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
 Frame = -2

Query: 476 MASLATTKTISLEHNYNWNIILRKLTF-FVYNTVSKINIHCRSLPTILL--------KVG 324
           M SL  T  + +  ++   I+  K+ F  VY    KI      LP+  L        K  
Sbjct: 409 MVSLLQTPRVPIGASFLAAIVFAKIGFEVVYRLPYKILFEDDRLPSFALTLTHESFRKFM 468

Query: 323 LIYFDAQFSITNSIFILIHCYSLI 252
           + Y D   +    IF +++CYS++
Sbjct: 469 IYYIDVIVATMAIIFTIVNCYSML 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,642
Number of Sequences: 27780
Number of extensions: 188516
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)