Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2166
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    29   0.72 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   2.2  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.2  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   2.9  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    27   2.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.9  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   3.9  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   3.9  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.1  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.9  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.9  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 371 YRCVMVYRYKVVRLFVWLLMVSLLMMGIVTDDTLGRHSVP 252
           +RC+ V     + LF+W+L V +  + I+T   +G + VP
Sbjct: 311 WRCMAVALEFPITLFLWMLAVYVSFLPIMTRRHIGDYGVP 350


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 637 PLNTQLTKNQDSTLKLSTPDSQARGANSPAQSPPLNYS*SN 759
           P+NT+L+ N   T   S   ++AR A  P Q P      SN
Sbjct: 480 PINTKLSANAAKTNYQSYLTNKARNATQPTQPPVSQVDYSN 520


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 39  ALGIVIFLTVGYCQEHNHHG--YTLQTLVKH--DVPQKIKTHHAIPVK 170
           AL IVI +TVG+ QE+        L  LV H  +V +  KT H +  K
Sbjct: 88  ALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASK 135


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 312 GEFAHDGYRDGRYFGKTQRARGNALSGSRERMRRG 208
           G++  D YR GR   +    RG     +R+  RRG
Sbjct: 203 GDYRRDAYRPGRDDERRYAPRGEYRRNNRDEYRRG 237


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 661 FLSAVYLTVRMEPSAS*RLYSPFTTSPSRISCW 563
           +L  VY   +++PS S R +SP     S +  W
Sbjct: 239 YLGYVYFLNKLKPSVSLRFHSPMIDDISAVKTW 271


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 2/169 (1%)
 Frame = +1

Query: 220  PLTRTTQGIPTGTLCLPKVSSVTIPIMSKLTMSNHTNSLTTLYRYTITHL*SMKXXXXXQ 399
            P+T +T    +  +    V + + PI S   +++ T   ++    + T + S        
Sbjct: 779  PITSSTVVNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTST 838

Query: 400  YTTSQFITYRYTIFNKSPXXXXXXXXXXXXKIIMHTPNMLSNTKLKIPTPVTISTSTRSA 579
              TS  +    T    S              +   TP + S++ L   TP+T ST   ++
Sbjct: 839  PITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTP-ITSSSVLNSSTPITSSTVVNTS 897

Query: 580  MVM**KENTVFTRLT--APFVPLNTQLTKNQDSTLKLSTPDSQARGANS 720
              +    +TV    T       LNT       S L  STP + + G N+
Sbjct: 898  TPI--TSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNT 944


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 622 TAPFVPLNTQLTKNQDSTLKLSTPDSQARGANSPAQS 732
           T  F PLN +  K+QD  L     DSQ    +SPA S
Sbjct: 100 TGSFTPLNNKHLKSQDQPLS----DSQLDTGDSPATS 132


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 498 YAYPKYAFEYKIEDPHTGDNKYQHEI 575
           Y   KYA E  I+D HT DN ++  I
Sbjct: 157 YGKTKYAIENIIKDLHTSDNTWRGAI 182


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 309 EFAHDGYRDGRYFGKTQRARGNALSGSRERMRRGLH*FHRQAQH 178
           E  ++ Y   RY  K+  +  ++ S SR  + R LH ++R A H
Sbjct: 326 EHGNNWYTCNRYEEKSSTSARDSQSKSRASLERYLHYYNRFANH 369


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 169 LTGIAWWVLIFCGTSCFTK 113
           + GIAW  LIF   SC TK
Sbjct: 31  ILGIAWLFLIFLCCSCLTK 49


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 637 PLNTQLTKNQDSTLKLSTPDSQARGANSPAQSPP 738
           P    L  + D TL  ST  S A  A SPA SPP
Sbjct: 296 PYKPYLNSSHD-TLGSSTRPSSADTAGSPATSPP 328


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 425 YVMNWDVVYWS 393
           YVMN DVVYW+
Sbjct: 102 YVMNQDVVYWT 112


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 613  TRLTAPFVPLNTQLTKNQDSTLKLST 690
            T+L  P++ + T +TK +D  ++ ST
Sbjct: 1113 TKLRKPYIAVGTSITKGEDIAVRGST 1138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,259
Number of Sequences: 5004
Number of extensions: 46794
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)