Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2166
(763 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB033069-1|BAA86557.2| 828|Homo sapiens KIAA1243 protein protein. 33 1.5
CR533542-1|CAG38573.1| 359|Homo sapiens DKFZP434G072 protein. 31 4.5
BC074759-1|AAH74759.1| 359|Homo sapiens chromosome 4 open readi... 31 4.5
AK223345-1|BAD97065.1| 359|Homo sapiens chromosome 4 open readi... 31 4.5
BT009908-1|AAP88910.1| 330|Homo sapiens homeo box C13 protein. 30 7.8
BC090850-1|AAH90850.1| 330|Homo sapiens homeobox C13 protein. 30 7.8
BC002754-1|AAH02754.1| 330|Homo sapiens HOXC13 protein protein. 30 7.8
AK024027-1|BAB14786.1| 146|Homo sapiens protein ( Homo sapiens ... 30 7.8
AJ438986-1|CAD27941.1| 330|Homo sapiens hypothetical protein pr... 30 7.8
AF263466-1|AAF73439.1| 330|Homo sapiens HOXC13 protein. 30 7.8
AF255676-1|AAF67760.1| 330|Homo sapiens homeoprotein C13 protein. 30 7.8
>AB033069-1|BAA86557.2| 828|Homo sapiens KIAA1243 protein protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 613 TRLTAPFVPLNTQLTKNQDSTLKLSTPDSQARGANSPAQSP 735
T L APF PLN + + + +S L +TP++ + ++P + P
Sbjct: 82 TILPAPFKPLNDKNSNSGNSALNNATPNTPRQNTSTPVRKP 122
>CR533542-1|CAG38573.1| 359|Homo sapiens DKFZP434G072 protein.
Length = 359
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 223 LTRTTQGIPTGTLCLPKVSSVTIPIMSKLTMSNHTNSLTTLYRYTI 360
+T T + T+C+P I I++KL HT+SL + ++ +
Sbjct: 159 MTSTKNDVKANTICIPNYLDQEIKILAKLCSILHTDSLAEVLQWLL 204
>BC074759-1|AAH74759.1| 359|Homo sapiens chromosome 4 open reading
frame 17 protein.
Length = 359
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 223 LTRTTQGIPTGTLCLPKVSSVTIPIMSKLTMSNHTNSLTTLYRYTI 360
+T T + T+C+P I I++KL HT+SL + ++ +
Sbjct: 159 MTSTKNDVKANTICIPNYLDQEIKILAKLCSILHTDSLAEVLQWLL 204
>AK223345-1|BAD97065.1| 359|Homo sapiens chromosome 4 open reading
frame 17 variant protein.
Length = 359
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 223 LTRTTQGIPTGTLCLPKVSSVTIPIMSKLTMSNHTNSLTTLYRYTI 360
+T T + T+C+P I I++KL HT+SL + ++ +
Sbjct: 159 MTSTKNDVKANTICIPNYLDQEIKILAKLCSILHTDSLAEVLQWLL 204
>BT009908-1|AAP88910.1| 330|Homo sapiens homeo box C13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>BC090850-1|AAH90850.1| 330|Homo sapiens homeobox C13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>BC002754-1|AAH02754.1| 330|Homo sapiens HOXC13 protein protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>AK024027-1|BAB14786.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ13965 fis, clone Y79AA1001391, moderately
similar to HOMEOBOX PROTEIN HOX-A13. ).
Length = 146
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 115 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 146
>AJ438986-1|CAD27941.1| 330|Homo sapiens hypothetical protein
protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>AF263466-1|AAF73439.1| 330|Homo sapiens HOXC13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>AF255676-1|AAF67760.1| 330|Homo sapiens homeoprotein C13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 8 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,611,890
Number of Sequences: 237096
Number of extensions: 1869553
Number of successful extensions: 8097
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8097
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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