Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2166
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-1|CAB60426.3| 780|Caenorhabditis elegans Hypothetical ... 33 0.29
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.89
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 30 1.6
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z82076-5|CAB04935.2| 307|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 28 8.3
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 28 8.3
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 28 8.3
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 28 8.3
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 8.3
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 8.3
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 8.3
>AL110500-1|CAB60426.3| 780|Caenorhabditis elegans Hypothetical
protein Y87G2A.1 protein.
Length = 780
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 60 LTVGYCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHV 182
+T+ YC EH HGY L+ +H P+ +PV +V
Sbjct: 398 VTIDYCLEHQQHGYDLEP--RHFGPRSATNSRGLPVAKDYV 436
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 31.1 bits (67), Expect = 0.89
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 496 IMHTPNMLSNTKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAP--FVPLNTQLTKNQD 669
+M TP +L+ T IPTP +S + AMV K + T + AP VP +L
Sbjct: 302 LMSTPQVLAGTPSVIPTPAMMSPN--PAMVQ--KSSKPSTPIPAPPVLVP-QVELPAKTS 356
Query: 670 STLKLSTPDSQARGANSPAQSPP 738
S + +T P Q PP
Sbjct: 357 SVSQKTTVSPPVEKVTPPPQHPP 379
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +1
Query: 544 TPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQLTKNQDSTLKLSTPDSQARGANSP 723
+P T TS S V T T + + PL +Q T S+L TP S GA SP
Sbjct: 429 SPSTAGTSLASTAV------TTETSIGSSSTPLPSQSTSLSMSSLSTYTPSSSTAGATSP 482
Query: 724 A 726
A
Sbjct: 483 A 483
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
protein C05A9.1 protein.
Length = 1283
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 42 LGIVIFLTVGYCQEHNHH--GYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVYET 200
LG+V + G CQ + G T Q LVK V I PV AH ++E+
Sbjct: 70 LGVVFSILTGMCQPFESYTLGETSQVLVK--VTNAINNKTIDPVDLAHAYKLFES 122
>Z82076-5|CAB04935.2| 307|Caenorhabditis elegans Hypothetical
protein W07G1.3 protein.
Length = 307
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 199 LMKP-TPHPLTRTTQGIPTGTLC 264
+M P PHP+ T G+P GT C
Sbjct: 138 VMSPIAPHPIPVDTNGVPLGTQC 160
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = +1
Query: 505 TPNMLSNTKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQLTKNQDSTLKL 684
TP+ + T P P T T+T S+ T + +P T T + +T
Sbjct: 509 TPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKTTTSTP 568
Query: 685 STPDSQARGANSPAQS 732
++P + +PA S
Sbjct: 569 TSPQTTTTHVGAPASS 584
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = +1
Query: 505 TPNMLSNTKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQLTKNQDSTLKL 684
TP+ + T P P T T+T S+ T + +P T T + +T
Sbjct: 350 TPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKTTTSTP 409
Query: 685 STPDSQARGANSPAQS 732
++P + +PA S
Sbjct: 410 TSPQTTTTHVGAPASS 425
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = +1
Query: 505 TPNMLSNTKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQLTKNQDSTLKL 684
TP+ + T P P T T+T S+ T + +P T T + +T
Sbjct: 390 TPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKTTTSTP 449
Query: 685 STPDSQARGANSPAQS 732
++P + +PA S
Sbjct: 450 TSPQTTTTHVGAPASS 465
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 526 TKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQLTKNQDSTLKLSTPDS 699
T +P P T ST+T + ++ ++ T T VP+ + T+ +T ST S
Sbjct: 439 TTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPTTTTYTTSTSTS 496
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 525 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
Y+ E P + ++YQ IRD + + Y+ E S +Y D++
Sbjct: 19 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 64
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 525 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
Y+ E P + ++YQ IRD + + Y+ E S +Y D++
Sbjct: 1659 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1704
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 525 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
Y+ E P + ++YQ IRD + + Y+ E S +Y D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 525 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
Y+ E P + ++YQ IRD + + Y+ E S +Y D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,881
Number of Sequences: 27780
Number of extensions: 265423
Number of successful extensions: 793
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -