Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2164
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0184 - 21006659-21009823 31 1.0
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 2.4
12_01_0993 - 10069179-10070057,10070708-10071049 29 4.2
08_02_0009 + 11216532-11218687,11220727-11225998 29 4.2
08_02_0003 + 11180421-11180757,11180773-11185715 29 4.2
08_02_0002 + 11173365-11173512,11173528-11178470 29 4.2
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 29 4.2
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 29 5.5
10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565 29 5.5
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 29 5.5
09_04_0085 + 14441123-14443507,14443731-14443787 29 5.5
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 29 5.5
06_01_0223 - 1709897-1709912,1710188-1712520 29 5.5
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 5.5
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 5.5
02_02_0337 - 9096588-9096603,9096879-9097927 28 7.3
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 28 9.7
05_06_0112 + 25654143-25655060 28 9.7
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 239 GRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 114
G +D P P GV+R+ PP GDD P P DG P
Sbjct: 272 GDKDQPLPPDCGVKRQL--PPQSDGDDKQQPPPQSDGSDQPP 311
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = -3
Query: 479 LKEQPEPQIVSSESVRVQELIESGQENVQ 393
LK+QP+PQ++++++ V+EL++ + Q
Sbjct: 89 LKDQPQPQVMANQTQTVEELLQQMRHRYQ 117
>12_01_0993 - 10069179-10070057,10070708-10071049
Length = 406
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 274 LNRSCCSTCRRIASIPC*HPQQPCDREPRY 363
L+R CC R I C QQPC +Y
Sbjct: 336 LDRGCCGVGRNNGQITCLPMQQPCGDRSKY 365
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/120 (25%), Positives = 44/120 (36%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*R 473
I T + S H DY C + S+G + R HQ+R NN+ R
Sbjct: 1425 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNIRTKKRYFLRR 1484
Query: 472 SNQSHRSFLQKVFVSKS*LSQDRKMCNSRVCKHRCGDSVAHDRRAAVDVNTGLMRYGGRY 293
S+ + FL K V + + K + C RC + D + N RY +Y
Sbjct: 1485 SD-NRAPFLHKRNVRR----YNPKKTYDKTC--RCFICNSPDHLSRTCPNKDQKRYSSKY 1537
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/120 (25%), Positives = 44/120 (36%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*R 473
I T + S H DY C + S+G + R HQ+R NN+ R
Sbjct: 709 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNIRTKKRYFLRR 768
Query: 472 SNQSHRSFLQKVFVSKS*LSQDRKMCNSRVCKHRCGDSVAHDRRAAVDVNTGLMRYGGRY 293
S+ + FL K V + + K + C RC + D + N RY +Y
Sbjct: 769 SD-NRAPFLHKRNVRR----YNPKKTYDKTC--RCFICNSPDHLSRTCPNKDQKRYSSKY 821
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/120 (25%), Positives = 44/120 (36%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*R 473
I T + S H DY C + S+G + R HQ+R NN+ R
Sbjct: 646 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNIRTKKRYFLRR 705
Query: 472 SNQSHRSFLQKVFVSKS*LSQDRKMCNSRVCKHRCGDSVAHDRRAAVDVNTGLMRYGGRY 293
S+ + FL K V + + K + C RC + D + N RY +Y
Sbjct: 706 SD-NRAPFLHKRNVRR----YNPKKTYDKTC--RCFICNSPDHLSRTCPNKDQKRYSSKY 758
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 119 QPPHHPALVLDPHGRPLDTAEVINARALHLQAKALE 226
+ PHHPA +D P TA+++ ++ A LE
Sbjct: 316 EEPHHPAAEVDDEPEPTTTADLLGLNEVNPAAAQLE 351
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 614 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 663
>10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565
Length = 245
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 188 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 237
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 586 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 635
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 773
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 553 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 602
>06_01_0223 - 1709897-1709912,1710188-1712520
Length = 782
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 773
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 773
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 773
>02_02_0337 - 9096588-9096603,9096879-9097927
Length = 354
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 652 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 503
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 296 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKKIYKHQNRNNNNI 345
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 8 SDLIVRRILTQTTFTMNALVVLFALASVT---CGSLV---PLAQPPHHPALVLDPHG 160
S+ IV+ L Q LVV L++V C S+V +A+ HH LV DP+G
Sbjct: 542 SERIVQDALNQIMVGRTTLVVAHRLSTVRNAHCISVVHKGKIAEQGHHDELVKDPNG 598
>05_06_0112 + 25654143-25655060
Length = 305
Score = 27.9 bits (59), Expect = 9.7
Identities = 28/111 (25%), Positives = 44/111 (39%)
Frame = -1
Query: 601 SCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*RSNQSHRSFLQKVFVSKS 422
SC SM H + RG H G + R ++++ G S S+ S RS VS
Sbjct: 89 SCRSMDPAAAVHPYPRGRGAHGAGRR-RSGGGISSASGGVSGLSSMSCRSMDPSAAVS-- 145
Query: 421 *LSQDRKMCNSRVCKHRCGDSVAHDRRAAVDVNTGLMRYGGRYYSRSD*VD 269
+ R + C + H RR A + ++ G+++ RS D
Sbjct: 146 -----QYQYRPREVEFSCSSTPLHRRRRAQRRSQLRLQQHGQWHDRSSAAD 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,760
Number of Sequences: 37544
Number of extensions: 349121
Number of successful extensions: 1255
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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