Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2163
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   2.0  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   2.7  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   4.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   6.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    24   8.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   8.1  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 264 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG 124
           TS++P    S     NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 15  YRHLVFTIAPPTTGVEFIRTTWSHCGHPQCVSR 113
           Y  LVFT      GV  IR+ W +   P  ++R
Sbjct: 684 YHELVFTTKSYVRGVSSIRSNWLNAVAPHYLAR 716


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 296 T*W*VVTVAHGLQQCQGQSQAAAYRLILST 207
           T W +V++ HGLQ C   +   A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 373 QIGSVQLYISSIFFFIALVGRRAYGPPDGEWLPL 272
           QIG  ++Y+ S+  FI L    A G   G  LP+
Sbjct: 147 QIGRQKIYVLSLIVFICLQIPTALGSSLGVLLPM 180


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 114 LWKRTVDDRSGSR*YG*TLLRWWAVRW 34
           +WK  V+DRSG +  G T   W    W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 PSGYGMSSPPRCSPSAMTCPSSNEA 206
           P+ Y  S+PP+ +P+    PSS  +
Sbjct: 220 PATYCPSNPPQLAPATAIAPSSQSS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,311
Number of Sequences: 5004
Number of extensions: 39300
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)