Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2163
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 30 0.84
12_02_1146 + 26458426-26458680 29 1.1
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093 29 1.5
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 2.6
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 27 5.9
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 27 5.9
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 27 5.9
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 27 5.9
09_02_0315 - 7179332-7179949 27 7.8
08_01_0951 - 9436319-9436372,9436536-9436622,9436700-9436728,943... 27 7.8
04_04_1471 - 33823654-33824085 27 7.8
01_06_1100 + 34530132-34530485,34530544-34530705 27 7.8
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 29.9 bits (64), Expect = 0.84
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +3
Query: 135 SGYGMSSPPRCSPSAMTCPSSNEACGEY*AVGSGLALPLALLKSMGNGNHSPS 293
+G G SP + SPS PS N GSG A P + S G GN PS
Sbjct: 79 NGKGYQSPYQPSPS----PSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPS 127
>12_02_1146 + 26458426-26458680
Length = 84
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 238 KPLPTA*YSPQASFEEGHVIALGEHRGGELIP*PDGTWQKRSLETHCG*PQWLQV 74
K LP Y A+ E + LGE+ GG+ + +W S HC P WL++
Sbjct: 15 KALPKVVYGTAAAAESSCAVCLGEYGGGDEL--RVLSWCAHSFHRHCVDP-WLRL 66
>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
Length = 435
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +2
Query: 20 ASRFYHRTAHHRSRVHPYYLEPLRSSTV---RFQRSFLPRTIRLWNE-LPSTVFPERYDM 187
+ +HR HH R P L P+ + + R R+ R+ +E LP + E +D
Sbjct: 319 SDHLFHRGDHHHQRARPLLLRPIARAVLEASRMGRAPAGEQARIADEHLP---YIEHWDA 375
Query: 188 SFFKRGLWR 214
+ + G WR
Sbjct: 376 MWHELGRWR 384
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 99 QCVSRDLFCHVPSGYGMSSPPRCSPSAMTCPSSNEACG 212
QCV++D + SPPRC S+ P E G
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRCPSSSCPEPQRQEFGG 144
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 228 GSGLALPLALLKSMGNGNHSPSGGPYARL 314
GS LA L LL M PSG YARL
Sbjct: 64 GSDLASSLRLLADMQAAGLRPSGAAYARL 92
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 288 VSGYRCPWTSAMPGAEPSRCLPLNTLHK 205
V+G CP ++ PG+ S LNT+H+
Sbjct: 84 VAGRSCPSSTLFPGSSLSSTALLNTMHE 111
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 146 NELPSTVFPERYDMSFFKRGLWRVLSG 226
N+ T + RY+M+F K G W++ G
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEG 925
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 54 GVEFIRT-TWSHCGHPQCVSRDLFCHVPSGY 143
G+ ++RT +W HCG+ + L HVP Y
Sbjct: 444 GLAYLRTESWVHCGNGMKQAIGLKFHVPEEY 474
>09_02_0315 - 7179332-7179949
Length = 205
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 224 GRQRLGSAPGIAEVHGQR*PLTIRWAVCSSAYKGNKKKYARNVQL 358
GR G A +AEV + P + W +CS Y+GN Y N++L
Sbjct: 80 GRVPRGGAR-VAEVLIEPGPERVAWVLCSWGYEGN---YLANLKL 120
>08_01_0951 -
9436319-9436372,9436536-9436622,9436700-9436728,
9437447-9438044
Length = 255
Score = 26.6 bits (56), Expect = 7.8
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 147 MSSPPRCSPSA--MTCPSSNEACGEY*AVGSGLALPLALLKSMGNGNHSPSGGPYARLPT 320
+S P +C+ + + + +A EY +G AL L+ G GG Y R PT
Sbjct: 125 LSPPQKCTAALRMLAYGTPADALDEYLKIGKSTALEC--LEMFSQGVIEVFGGTYLRRPT 182
Query: 321 RAIKKNMLEM 350
R +++L +
Sbjct: 183 REDVEHILHV 192
>04_04_1471 - 33823654-33824085
Length = 143
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 81 SHCGHPQCVSRDLFCHVPSGYGMSSPPRCSPSAMTC 188
+H HP V R+L YG S C P A+ C
Sbjct: 54 AHLNHP--VFRELLRQAEEEYGFPSGAYCGPIALPC 87
>01_06_1100 + 34530132-34530485,34530544-34530705
Length = 171
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 41 TAHHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 169
+A H H L+ L+ T + + + + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,499
Number of Sequences: 37544
Number of extensions: 343260
Number of successful extensions: 939
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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