Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2162
         (433 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55713 Cluster: PREDICTED: similar to CG8991-PA;...    81   1e-14
UniRef50_Q0P5V2 Cluster: Sine oculis-binding protein homolog; n=...    56   2e-07
UniRef50_Q8N2B2 Cluster: CDNA FLJ33560 fis, clone BRAMY2009557; ...    56   2e-07
UniRef50_A5X798 Cluster: JXC1; n=3; Sophophora|Rep: JXC1 - Droso...    50   3e-05
UniRef50_Q5RGY3 Cluster: Novel protein; n=3; Danio rerio|Rep: No...    49   5e-05
UniRef50_Q4S6S6 Cluster: Chromosome 14 SCAF14723, whole genome s...    45   6e-04
UniRef50_UPI0000DB7E46 Cluster: PREDICTED: similar to CG8991-PA,...    45   8e-04
UniRef50_A5X7A0 Cluster: Jxc1-A; n=2; Euteleostomi|Rep: Jxc1-A -...    44   0.001
UniRef50_A5X799 Cluster: Jxc1; n=1; Anopheles gambiae|Rep: Jxc1 ...    38   0.090
UniRef50_Q54V57 Cluster: Putative uncharacterized protein; n=1; ...    38   0.12 
UniRef50_A7S5E4 Cluster: Predicted protein; n=1; Nematostella ve...    37   0.16 
UniRef50_A0BYR3 Cluster: Chromosome undetermined scaffold_137, w...    34   1.5  
UniRef50_Q7WQ51 Cluster: Putative TetR-family transcriptional re...    32   5.9  

>UniRef50_UPI0000D55713 Cluster: PREDICTED: similar to CG8991-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG8991-PA - Tribolium castaneum
          Length = 413

 Score = 81.0 bits (191), Expect = 1e-14
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +3

Query: 144 MDNNSSTKTPPLGVKKEN-EEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPE 320
           M+ + + +   + +KKE   ++IK+FAETAMNELLGWYGY     R   A ++   S+  
Sbjct: 1   MEKSGAEEIAKVTIKKEVLNDDIKEFAETAMNELLGWYGYANNNHRDARACKSHSGSNSS 60

Query: 321 QSNEQKNKDECSWCNKGITSESGALQHAGATFCSELC 431
                K  + C WC K +   +G L  A ATFCSELC
Sbjct: 61  GPPSPKFNEGCGWCGKAVDENTG-LSSAAATFCSELC 96


>UniRef50_Q0P5V2 Cluster: Sine oculis-binding protein homolog; n=16;
           Euteleostomi|Rep: Sine oculis-binding protein homolog -
           Mus musculus (Mouse)
          Length = 864

 Score = 56.4 bits (130), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +3

Query: 153 NSSTKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELR 278
           N  ++ P   VK+E  EE+K+FAE  MNELLGWYGY+++EL+
Sbjct: 13  NKRSRKPAHPVKREINEEMKNFAENTMNELLGWYGYDKVELK 54


>UniRef50_Q8N2B2 Cluster: CDNA FLJ33560 fis, clone BRAMY2009557;
           n=15; Tetrapoda|Rep: CDNA FLJ33560 fis, clone
           BRAMY2009557 - Homo sapiens (Human)
          Length = 232

 Score = 56.4 bits (130), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +3

Query: 153 NSSTKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELR 278
           N  ++ P   VK+E  EE+K+FAE  MNELLGWYGY+++EL+
Sbjct: 13  NKRSRKPAHPVKREINEEMKNFAENTMNELLGWYGYDKVELK 54


>UniRef50_A5X798 Cluster: JXC1; n=3; Sophophora|Rep: JXC1 -
           Drosophila melanogaster (Fruit fly)
          Length = 813

 Score = 49.6 bits (113), Expect = 3e-05
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
 Frame = +3

Query: 150 NNSSTKTPPLGVKKE-NEEEIKDFAETAMNELLGWYGYE-----RLELRRWAASRAKDAS 311
           N  S+   P+ +KKE   +EIK+FA   MNELLGWYG+E     RL+L    +   + A+
Sbjct: 54  NVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLDLTAKTSRLLQSAA 113

Query: 312 SPEQSNEQKNK 344
           +   +N+Q ++
Sbjct: 114 AAAVANQQSHQ 124


>UniRef50_Q5RGY3 Cluster: Novel protein; n=3; Danio rerio|Rep: Novel
           protein - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 210

 Score = 48.8 bits (111), Expect = 5e-05
 Identities = 19/48 (39%), Positives = 35/48 (72%)
 Frame = +3

Query: 162 TKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKD 305
           ++ P   +++   E++K+FAE  MNELLGWYGY++++L+   A+ A++
Sbjct: 11  SRKPAHPLRRNISEDMKNFAENTMNELLGWYGYDKVDLQDSEAADARN 58


>UniRef50_Q4S6S6 Cluster: Chromosome 14 SCAF14723, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
           SCAF14723, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 856

 Score = 45.2 bits (102), Expect = 6e-04
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 216 FAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQ 335
           FAE+ MNELLGWYGY+++ELR    S A DA +  +  +Q
Sbjct: 42  FAESTMNELLGWYGYDKVELR---DSEANDARNYRERRQQ 78


>UniRef50_UPI0000DB7E46 Cluster: PREDICTED: similar to CG8991-PA,
           partial; n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG8991-PA, partial - Apis mellifera
          Length = 302

 Score = 44.8 bits (101), Expect = 8e-04
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +3

Query: 213 DFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQKNKDECSWCNKGITS---- 380
           ++A  AM+ELLGWYGY++++     +      +S  +S  + N   CSWC +  T     
Sbjct: 1   EYAANAMSELLGWYGYDKVDSSCTKSLNLDHFTS--KSITKNNNISCSWCGRTCTQTYES 58

Query: 381 ---ESGALQHAGATFCSELC 431
               S  + ++   FCSE C
Sbjct: 59  EKIHSYNMMNSMGYFCSETC 78


>UniRef50_A5X7A0 Cluster: Jxc1-A; n=2; Euteleostomi|Rep: Jxc1-A -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 936

 Score = 44.0 bits (99), Expect = 0.001
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 195 NEEEIKDFAETAMNELLGWYGYERLELR 278
           N   +  FAE  MNELLGWYGY+++ELR
Sbjct: 51  NSPYLMSFAENTMNELLGWYGYDKVELR 78


>UniRef50_A5X799 Cluster: Jxc1; n=1; Anopheles gambiae|Rep: Jxc1 -
           Anopheles gambiae (African malaria mosquito)
          Length = 889

 Score = 37.9 bits (84), Expect = 0.090
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +3

Query: 219 AETAMNELLGWYGYERLELRRWAASRAKDASS 314
           AETAMN++LGWYGY+ ++    AA+    ++S
Sbjct: 2   AETAMNDILGWYGYDSVDRLELAANNVLPSTS 33


>UniRef50_Q54V57 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1015

 Score = 37.5 bits (83), Expect = 0.12
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +3

Query: 186 KKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQKNKDE 350
           +K+NEEE+ +F  T  +E+ G Y  E+ E +       ++ +  E  NE KNK+E
Sbjct: 189 QKQNEEEVIEFLNTKKSEIDG-YAIEKKENQNQNQKENENENENESENENKNKNE 242


>UniRef50_A7S5E4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 489

 Score = 37.1 bits (82), Expect = 0.16
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +3

Query: 201 EEIKDFAETAMNELLGWYGYE 263
           E+IKD+A+T MNELLG +GY+
Sbjct: 25  EDIKDYAKTTMNELLGMFGYD 45


>UniRef50_A0BYR3 Cluster: Chromosome undetermined scaffold_137, whole
            genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_137, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 4112

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 141  KMDNNSSTKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDA--SS 314
            + +NNS  K        +NE+E +   +  +++LL  YG E +E RRW   R +     +
Sbjct: 1823 RRNNNSKGKNKSSQENLQNEKEQQQLIQAKLDQLLE-YGPEPMEERRWLNFRERQVLPIT 1881

Query: 315  PEQSNEQKNKDE 350
             E +N   +KD+
Sbjct: 1882 LENNNHADDKDD 1893


>UniRef50_Q7WQ51 Cluster: Putative TetR-family transcriptional
           regulator; n=2; Bordetella|Rep: Putative TetR-family
           transcriptional regulator - Bordetella bronchiseptica
           (Alcaligenes bronchisepticus)
          Length = 207

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 171 PPLGVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQKNKDE 350
           PP G++    + ++D   T   +L    GYE + + R   ++A D +     N    KD 
Sbjct: 3   PPPGLRARKRQSVRDTITTVAGQLFRQDGYEAVTMER--VAQAADVARGTLYNHFPTKDH 60

Query: 351 --CSWCNKGITSESGAL 395
              +W ++ +  + G+L
Sbjct: 61  VLAAWVHQELARDLGSL 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,829,706
Number of Sequences: 1657284
Number of extensions: 5650314
Number of successful extensions: 19973
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19961
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)