Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2162
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   2.8  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   2.8  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    25   3.8  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    24   8.7  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 183 VKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQKNKD 347
           +KK N E +K +  T +NEL+G+     +         A +AS    S  +   D
Sbjct: 39  MKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLEEAVEASKTSDSQNESTLD 93


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +3

Query: 147 DNNSSTKTPPLGVKKENEEEI-KDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQ 323
           + +  +++P L    E + +I +DF E  +   + W+  E L L  +      D    E 
Sbjct: 298 EEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEALALENYDGFSDLDVEEDED 357

Query: 324 SNEQKNKDECS 356
             E  + +E S
Sbjct: 358 DVESSSNEEVS 368


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 270 ELRRWAASRAKDASSPEQSNEQKNKDECSWCNKGITSESGA 392
           E+R+  +S+    S+ E S ++K +DE S       S S A
Sbjct: 92  EIRKVKSSKLSPISNMEDSEDKKEEDESSSYKNEFKSSSSA 132


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 318 QGWKRLLLARRPTS*APASRN 256
           +GW++LLL   P + A A RN
Sbjct: 546 KGWRKLLLDNGPAAFAKAVRN 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,502
Number of Sequences: 5004
Number of extensions: 23654
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)