Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2162
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0948 - 29592554-29592776,29594494-29594693                       30   0.92 
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    29   1.6  
02_05_0349 - 28172347-28172521,28172672-28172817                       28   2.8  
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461...    28   3.7  
02_05_0347 - 28155272-28155437,28155518-28155792                       27   4.9  
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014...    27   6.5  
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322...    27   6.5  

>04_04_0948 - 29592554-29592776,29594494-29594693
          Length = 140

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 345 DECSWCNKGITSESGALQHAGAT-FCSELC 431
           D C+ C K +T +S    + G T FCSE C
Sbjct: 25  DACALCTKQLTRDSDIFMYKGDTPFCSEEC 54


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -1

Query: 397 WSAPLSLVIPLLHHEHSSLF 338
           +S  +S+++P+LHH+H SL+
Sbjct: 625 FSTSISIMVPVLHHDHWSLY 644


>02_05_0349 - 28172347-28172521,28172672-28172817
          Length = 106

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 345 DECSWCNKGITSESGALQHAGAT-FCSELC 431
           D CS C K +T       + G T FCSE C
Sbjct: 30  DACSLCRKPLTRNCDIFMYRGNTPFCSEEC 59


>11_03_0146 +
           10744403-10744603,10745199-10745834,10745967-10746125,
           10746398-10747036,10748018-10748151,10748281-10748464,
           10748882-10749217,10751659-10751945,10752863-10753253,
           10753351-10753615,10753740-10753818,10754123-10754543
          Length = 1243

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 8/16 (50%), Positives = 15/16 (93%)
 Frame = -1

Query: 385 LSLVIPLLHHEHSSLF 338
           +S+++P+LHH+H SL+
Sbjct: 650 VSIIVPVLHHDHWSLY 665


>02_05_0347 - 28155272-28155437,28155518-28155792
          Length = 146

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 345 DECSWCNKGITSESGALQHAGAT-FCSELC 431
           DEC+ C KG+  +     + G T FCSE C
Sbjct: 75  DECTLCRKGLAGD--IFMYRGDTPFCSEEC 102


>12_01_1057 -
           10899871-10899961,10900255-10900411,10901420-10901498,
           10901618-10901707,10903232-10903486,10903674-10903689,
           10903907-10903940,10905653-10905884
          Length = 317

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 180 GVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAAS 293
           G +    + IKD  +TA   LL W  +  +EL+  A+S
Sbjct: 36  GPENLRRDMIKDMQKTAEASLLSWLHHPSIELKEAASS 73


>04_01_0246 +
           3225743-3226473,3226493-3226624,3227580-3227670,
           3228617-3229074,3229342-3229864
          Length = 644

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 412 VAPACWSAPLSLVIPLL 362
           ++P CWS P SL+I LL
Sbjct: 220 MSPGCWSPPCSLLIRLL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,842,079
Number of Sequences: 37544
Number of extensions: 156105
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)