Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2162
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    27   5.8  
Z93396-2|CAB07711.1|  343|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    27   7.7  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 282 WAASRAKDASSPEQSNEQKNKDE 350
           W A+ AKD+SS + S+E  N D+
Sbjct: 22  WEAAGAKDSSSDDSSDESDNDDQ 44


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 186 KKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQKNKD 347
           K+++E+E K   E    E      ++ +E +R A +RAK     +Q  +QKN+D
Sbjct: 287 KEKHEQEEKQKKENL--ERAEKERHDHIERQRQAEARAKALEQEKQEEKQKNED 338


>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -3

Query: 296 SRGGPPPKLQP-LVTVPAK 243
           S+GGP PK +P LV+VP+K
Sbjct: 23  SQGGPKPKAKPTLVSVPSK 41


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 150  NNSSTKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSN 329
            + SS   PP   KKE+E+      E    E++G       + +  A+SR K   +   SN
Sbjct: 1413 STSSASAPPPKKKKESEDSEDPMEEDEEEEIIG-------QKKEPASSRRKSRPTRRFSN 1465

Query: 330  EQKNKDE 350
            E + +++
Sbjct: 1466 EDEEEED 1472


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 150  NNSSTKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSN 329
            + SS   PP   KKE+E+      E    E++G       + +  A+SR K   +   SN
Sbjct: 1413 STSSASAPPPKKKKESEDSEDPMEEDEEEEIIG-------QKKEPASSRRKSRPTRRFSN 1465

Query: 330  EQKNKDE 350
            E + +++
Sbjct: 1466 EDEEEED 1472


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
            protein protein.
          Length = 1474

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 150  NNSSTKTPPLGVKKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSN 329
            + SS   PP   KKE+E+      E    E++G       + +  A+SR K   +   SN
Sbjct: 1413 STSSASAPPPKKKKESEDSEDPMEEDEEEEIIG-------QKKEPASSRRKSRPTRRFSN 1465

Query: 330  EQKNKDE 350
            E + +++
Sbjct: 1466 EDEEEED 1472


>Z93396-2|CAB07711.1|  343|Caenorhabditis elegans Hypothetical
           protein ZC15.3 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 336 KNKDECSWCNKGITSESGALQHAGATFC 419
           K K++C+ C K +     A  H  ATFC
Sbjct: 277 KEKEQCTRCTKYMKPGEIAQTHHNATFC 304


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 336 KNKDECSWCNKGITSESGALQHAGATFC 419
           K K++C+ C K +     A  H  ATFC
Sbjct: 569 KEKEQCTRCTKYMKPGEIAQTHHNATFC 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,136
Number of Sequences: 27780
Number of extensions: 132330
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)