Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2162
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.27 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   5.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   5.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   5.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 LKMDNNSSTKTPPLGVKKENEEEIKD 215
           LK D N S  +PP+  K++  +E ++
Sbjct: 610 LKTDTNQSCPSPPVTTKRDGTQETEE 635


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 147 DNNSSTKTPPLGVKKENEEEIKDF 218
           D+ SST+TPP   +    E I+ F
Sbjct: 531 DSKSSTETPPSYNQLNYNENIERF 554


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 27 SERMKTRARRNVCEILSFR 83
          +E    R RR  C++LSF+
Sbjct: 34 NEERADRHRRVTCDLLSFK 52


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 27 SERMKTRARRNVCEILSFR 83
          +E    R RR  C++LSF+
Sbjct: 34 NEERADRHRRVTCDLLSFK 52


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 27 SERMKTRARRNVCEILSFR 83
          +E    R RR  C++LSF+
Sbjct: 9  NEERADRHRRVTCDLLSFK 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,738
Number of Sequences: 438
Number of extensions: 1528
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)