Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2161
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 31 0.44
11_01_0311 + 2322511-2323527 29 1.0
10_02_0147 - 5855100-5855105,5855176-5855808 29 1.0
10_07_0077 + 12645091-12646750,12647612-12648273 29 1.4
03_01_0583 - 4321169-4321279,4321328-4321384,4321532-4321702,432... 29 1.4
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 2.4
08_01_0054 - 367770-370166 28 3.1
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 28 3.1
07_03_0564 - 19554830-19554894,19555245-19555512 27 5.5
06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262 27 7.2
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562... 27 7.2
09_03_0081 + 12163213-12164088 26 9.5
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 26 9.5
>12_02_1263 + 27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -2
Query: 328 KDYGDRQRSQRIVEWYHVDHSQHDLQ-PSLFFVSDHVQFDEQNR*LFIAQHRYHLFQEKD 152
KD+G +R ++W H + H LQ P S+ ++E N+ A+ R + + ++
Sbjct: 847 KDFGKEERE---LKWAHAQRTLHGLQPPDAKMFSEKAGYNELNQMAEEAKRRAEIARLRE 903
Query: 151 AHKSKSYSTKLQYYKP-DFKSLESIYAM 71
H K + + K D ++++ Y +
Sbjct: 904 LHTLKGHVESVVKLKGLDIETIQQSYTV 931
>11_01_0311 + 2322511-2323527
Length = 338
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -3
Query: 300 SVLSSGITLTIHNTTCSHPSSLSAITC-SLTSRTGDSSSPSIAI-IFFRKRMRINRSPIP 127
S + G C+ PSS TC S +S T SSSP++++ + +R + +P P
Sbjct: 18 SCIGDGAVRVADVAACTAPSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAP-P 76
Query: 126 LNYSTT 109
L T
Sbjct: 77 LQLRLT 82
>10_02_0147 - 5855100-5855105,5855176-5855808
Length = 212
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 384 RNSFVSFMTESLKGT-GQSSKTMVIANGPSVLSS 286
RN F+S TE+ KGT Q K VIAN P SS
Sbjct: 59 RNQFLSSFTETHKGTLVQKYKVKVIANVPGTGSS 92
>10_07_0077 + 12645091-12646750,12647612-12648273
Length = 773
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 243 SSLSAITCSLTSRTGDSSSPSIAIIFFRKRMRINR 139
+ +S ITC R GD + PS +++F +K + R
Sbjct: 655 TKMSNITCPRKFRPGDLNYPSFSVVFKKKSKHVMR 689
>03_01_0583 -
4321169-4321279,4321328-4321384,4321532-4321702,
4321960-4322042,4322581-4322647,4322730-4322780,
4323203-4323265,4323363-4323413,4323500-4323556,
4324261-4324368
Length = 272
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = -2
Query: 259 DLQPSLFFVSDHVQFDEQNR*LFIAQHRYHLFQEKDAHKSKSYSTKLQYYKPDFKSLESI 80
D LF + +HVQ +EQ + L + H + + S + + P F+
Sbjct: 81 DFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQS 140
Query: 79 YAM*FLRFSHIK*MSRPL 26
YA+ L ++ K + RP+
Sbjct: 141 YAIHVLSLTYQK-VPRPV 157
>12_02_0953 -
24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 384 RNSFVSFMTESLKGTGQSSKTMVIAN-GPSVLSSGITLT 271
R+S ++F+ + G +SKTM+IAN PSV S+ TL+
Sbjct: 525 RDSRLTFLLQD--SLGGNSKTMIIANVSPSVCSASETLS 561
>08_01_0054 - 367770-370166
Length = 798
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -3
Query: 246 PSSLSAITCSLTSRTGDSSSPSIAIIFFRKRMRINRSPIPLNYSTTNLIL 97
P++ S + + SP++AI FR+ + + R +P N T ++++
Sbjct: 49 PTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVI 98
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 369 SFMTESLKGTGQSSKTMVIANGPSVLSSGITLTIHNTTCSHPSSLSAITC 220
+ + ++++GT S + +V+ SV GITL N T SS + TC
Sbjct: 183 NLLFKNIRGTSASEEAIVLHCSNSVPCHGITLENVNLTVKGGSSNAKSTC 232
>07_03_0564 - 19554830-19554894,19555245-19555512
Length = 110
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 339 GQSSKTMVIANGPSVLSSGITLTIHNTTCSHPSSLSAITCSLTSRTGDSSSPSIAII 169
G M++A ++ GI T P++ A TC+ R ++S+P++ I
Sbjct: 43 GGGEGMMIMARRRRLVVPGIIATAGGGVRLRPATKGAYTCARAQRARETSNPNVVHI 99
>06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262
Length = 530
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 180 IAIIFFRKRMRINRSPIPLNYSTTNLILKVLKAF 79
+ + F +R R+ P LN+S N+I +++ A+
Sbjct: 434 VIVAFITERSRLRNDP--LNFSALNMIFEIISAY 465
>06_01_0750 +
5624983-5625173,5626229-5626291,5626421-5626967,
5627075-5627226,5627317-5627533
Length = 389
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -3
Query: 318 VIANGPSVLSSGITLTIHNTTCSHPS--SLSAITCSLTSRTGDSSSPSIAIIFFRKRMRI 145
V+ G V SG + +NT S+P+ SL+A+ C L G + S ++A++ R+ M +
Sbjct: 197 VMLVGSCVCWSGFFILQNNTLQSYPAELSLTALICVL----GSAMSGAVALVAERRDMSV 252
>09_03_0081 + 12163213-12164088
Length = 291
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 291 SSGITLTIHNTTCSHPSSLSAITCSLTSRTGDSSSPSIA 175
S+ T + + CS PSS A +C ++ + S SPS A
Sbjct: 205 SAAATSSAPTSNCSSPSSDDASSCLESADSSPSLSPSSA 243
>01_06_0903 + 32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 26.2 bits (55), Expect = 9.5
Identities = 29/95 (30%), Positives = 43/95 (45%)
Frame = -3
Query: 357 ESLKGTGQSSKTMVIANGPSVLSSGITLTIHNTTCSHPSSLSAITCSLTSRTGDSSSPSI 178
ES + +S K++V G VL + L S S S T T RT DSS +I
Sbjct: 805 ESFLVSIESGKSLVSEKG--VLQILLDLRFIGDVLSGGKSSSTKTTE-TQRTHDSSPSAI 861
Query: 177 AIIFFRKRMRINRSPIPLNYSTTNLILKVLKAFMQ 73
A FR++ +S + + +T I K++ F Q
Sbjct: 862 AKTSFRRK----QSQLQADSATIEPINKLINKFSQ 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,759
Number of Sequences: 37544
Number of extensions: 202788
Number of successful extensions: 466
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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