Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2161
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    63   6e-11
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    27   6.5  
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 63.3 bits (147), Expect = 6e-11
 Identities = 29/70 (41%), Positives = 46/70 (65%)
 Frame = +2

Query: 188 DEESPVLLVKLHVIADKEEGWLQVVL*MVNVIPLDNTLGPLAITIVFDDCPVPFRDSVIK 367
           ++E P  L+KL+ IAD+E+GW  VV  ++  IP ++ LGP  I++  D+CP+P R+SV  
Sbjct: 130 EQEPPQSLLKLNFIADEEKGWTMVVRALIYTIPENDPLGPAVISLFLDECPLPSRESVQT 189

Query: 368 LTKLLRMSRQ 397
           L   L +S +
Sbjct: 190 LLLSLGLSSE 199


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -3

Query: 330 SKTMVIANGPSVLSSGITLTIHNTTCSHPSSLSAITCSLTSRTGDSSSPSIAIIFFRKRM 151
           S+   + N PSV +S IT T  +TT + P+S S  T   TS +    SPS      +KR 
Sbjct: 658 SRKKSLKNTPSVPTSTITTT--STTTNKPTSTS--TKQTTSSSSTEHSPSPMATSSQKRD 713

Query: 150 RINRSPI 130
            I+ + +
Sbjct: 714 SISNTDV 720


>U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical
           protein F56D2.3 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 246 PSSLSAITCSLTSRTGDSSSPSIAIIFFRKRMRINRSP 133
           P  +SA+    +S  G+SS+P +  +  RKR R   SP
Sbjct: 31  PCQISALFMVCSSPRGESSNPKVLNVKSRKRYRFIGSP 68


>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
            C09G5.8 protein.
          Length = 1531

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = -3

Query: 363  MTESLKGTGQSSKT-MVIANGPSVLSSGITLTIHNTTCSHPS-SLSAITCSLTSRTGDSS 190
            +TE  + T Q   T  ++   P   S    L I N   S      + ITCS ++ T +SS
Sbjct: 1284 LTEQPEATRQQGSTGRILFTDPLHFSVPRELMISNNFYSFSCFDTNVITCSKSNSTSESS 1343

Query: 189  SPSIAIIFFRKRMRINRSPIPLNYSTTNLILKVLK 85
            S S          R  ++P+PL     + ++KV K
Sbjct: 1344 STS-------SPRRAEKAPVPLPDYEGHSLIKVRK 1371


>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
            C09G5.8 protein.
          Length = 1531

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = -3

Query: 363  MTESLKGTGQSSKT-MVIANGPSVLSSGITLTIHNTTCSHPS-SLSAITCSLTSRTGDSS 190
            +TE  + T Q   T  ++   P   S    L I N   S      + ITCS ++ T +SS
Sbjct: 1284 LTEQPEATRQQGSTGRILFTDPLHFSVPRELMISNNFYSFSCFDTNVITCSKSNSTSESS 1343

Query: 189  SPSIAIIFFRKRMRINRSPIPLNYSTTNLILKVLK 85
            S S          R  ++P+PL     + ++KV K
Sbjct: 1344 STS-------SPRRAEKAPVPLPDYEGHSLIKVRK 1371


>AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical
           protein T28B4.1b protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 208 QNR*LFIAQHRYHLFQEKDAHKSKSYSTKLQYYKPDFKSLESIY 77
           +N  LF A H YH+ Q   A  S++  TK     PD K L  I+
Sbjct: 2   RNSQLFCANHAYHVQQTGSAGGSRTRRTKTIEKLPD-KVLRDIF 44


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = -1

Query: 395 ASTSATVSLAL*QSL*RVPDNHQRLW*SPTVPAYCRVVSR*PFTTRL 255
           ASTSAT++  +  S+ R+   H++   SP++ + C V+SR P T+ +
Sbjct: 187 ASTSATMNPIV-NSVRRLSTTHRQS--SPSLLSLCSVISRSPSTSSI 230


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -3

Query: 333 SSKTMVIANGPSVL-----SSGITLTIHNTTCSHPSSLSAITCSLTSRT 202
           SS  +  ANG  VL      SG+T    N   S PS++  + CS  + T
Sbjct: 54  SSICVTAANGQGVLICCSQPSGVTPICPNNAVSQPSTIGYVECSQNNPT 102


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 153 MRINRSPIPLNYSTTNLILKVLKAFMQCNF*DSHILNKCPG 31
           M+ N   +  +Y T   IL +LK     NF D+ IL K PG
Sbjct: 451 MKGNAKKLQTHYDTRATILDILKYQSTTNFLDTEIL-KIPG 490


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 180 IAIIFFRKRMRINRSPIPLNYSTTNLILKV 91
           I  +  +K MR NR+ + LN + +NLIL +
Sbjct: 72  IMAVVRKKTMRTNRNVLILNLALSNLILAI 101


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 180 IAIIFFRKRMRINRSPIPLNYSTTNLILKV 91
           I  +  +K MR NR+ + LN + +NLIL +
Sbjct: 92  IMAVVRKKTMRTNRNVLILNLALSNLILAI 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,098,535
Number of Sequences: 27780
Number of extensions: 180974
Number of successful extensions: 542
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)