Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2158
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   2.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.7  
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    26   4.9  

>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 122 VAQCWMHF*LSRLNGKGMKNAYNDNIWFVLLITCLEKVKK 3
           +AQC  H+ +SR   + +KN +N+++  V LI  +  +K+
Sbjct: 226 IAQCHQHWKVSRDRKQYIKNFHNESVNNVDLINKINSLKE 265


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 523 GGRAHSPPGVKWLLEPMDIYN 585
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 501 NVIFIYKTIQLAYCVYRKRLVCKNVN*KDPPIVSRQDTDCKLLTQLLEFIPSLSD 337
           N + I+      Y    K+L+ + +   DPP V  + TD +   +L +++ S+SD
Sbjct: 66  NPVIIFSRPGCPYSAAAKKLLTETLR-LDPPAVVVEVTDYEHTQELRDWLSSISD 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,826
Number of Sequences: 5004
Number of extensions: 59594
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)