Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2158
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 146 VKYSFGTTT--RPIVNKILIIQFKIFH*YKPYTVLIIYRWL 262
           ++YS G  T  + + N    + + +FH Y P  ++++  W+
Sbjct: 193 IEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSALIVVMSWI 233


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 293 DPPTTEVKVASASRKSLSEGMNSSNCVKSLQSVSCL 400
           DP     KV ++S  +  EG+ +S  + +L S+  L
Sbjct: 589 DPXPNTCKVIASSVSAGEEGLGNSLAITALSSILVL 624


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,385
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)