Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2157
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.4  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   3.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   7.8  

>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 122 SEPGASSSGVPRAPPNCARCRNHRLKIELKGHKRYCKYQHCTCEKCRLTADRQRV 286
           S P A      R+P +C  CR  ++K + +     CK ++  C     T D+  V
Sbjct: 3   SSPPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRCKERNEVCTYADDTIDKMNV 57


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 389 PVPPVVKAPRSPMIPPSAPRSL 454
           P PP +     P +PPSAP SL
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSL 439



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 365 PPGMELDRPVPPVVKAPRSPMIPPSAP 445
           PP +    P    + AP +P +PPSAP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 389 PVPPVVKAPRSPMIPPSAPRSLGSA 463
           P PP V   ++P IPP APR+L +A
Sbjct: 379 PKPPSVPTIQAP-IPPEAPRNLTNA 402


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 359  IQP--PGMELDRPVPPVVKAPRSPM--IPPSAP 445
            +QP  PGM  + P P    AP +P+  +PP+ P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVP 1490



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 365  PPGMELDRPVPPVVKAPRSPMIPP 436
            PP M    P PP +  P  P  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 392  VPPVVKAPRSPMIPPSAP 445
            VPP   AP  P  PPSAP
Sbjct: 1714 VPPPPSAPPMPAGPPSAP 1731


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 84  EPIDTIAGSSSAVYAAKLARVVTHAQ 7
           EP+  IA     +YAAK+A   +HA+
Sbjct: 145 EPVSIIADHIEIIYAAKIAAHASHAK 170


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 365 PPGMELDRPVPPVVKAPRSPMIP 433
           PPGM +  P P     P +P++P
Sbjct: 293 PPGMVMASPSPAAATIPGAPVMP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,043
Number of Sequences: 5004
Number of extensions: 41593
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)