Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2155
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.20 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 567 SRCQTYMNACTSQPDPNAGT 626
           S CQT +N C S P  N GT
Sbjct: 179 SYCQTEINECDSAPCQNGGT 198



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 570 RCQTYMNACTSQPDPNAGT 626
           RC+  +N C S P  NAGT
Sbjct: 294 RCEGDINECLSNPCSNAGT 312



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 567 SRCQTYMNACTSQPDPNAGTDKNFET 644
           S CQ  +N C S P  N  T ++  T
Sbjct: 56  SNCQNRINLCDSSPCLNGATCQDHTT 81


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -3

Query: 624  CPRWGPAETCTRSYRSGNGNAHSLRRCARTSPADRCTCSPDTELPPADGLGQ 469
            C R     TC + +R    +A        T+   RC C+  T    A G G+
Sbjct: 885  CWRECDKATCEKLFRMKKSSALRPASGGTTARVVRCVCAGSTGTRRATGCGR 936


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 465 RTDRDHQQEEALYQVNMYIDQLVMSVH 545
           RTDR H Q+      NMY  ++    H
Sbjct: 295 RTDRKHTQQHYQMNQNMYPGEMYNPEH 321


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 465 RTDRDHQQEEALYQVNMYIDQLVMSVH 545
           RTDR H Q+      NMY  ++    H
Sbjct: 243 RTDRKHTQQHYQMNQNMYPGEMYNPEH 269


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 465 RTDRDHQQEEALYQVNMYIDQLVMSVH 545
           RTDR H Q+      NMY  ++    H
Sbjct: 426 RTDRKHTQQHYQMNQNMYPGEMYNPEH 452


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 588 NACTSQPDPNAGTD 629
           N+CT + DPN   D
Sbjct: 141 NSCTVETDPNRALD 154


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 588 NACTSQPDPNAGTD 629
           N+CT + DPN   D
Sbjct: 148 NSCTVETDPNRAPD 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,180
Number of Sequences: 336
Number of extensions: 3599
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)