Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2155
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 119 2e-27
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 119 2e-27
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 119 2e-27
AF047655-8|AAC04397.1| 227|Caenorhabditis elegans Hypothetical ... 35 0.051
U80027-18|AAC48115.1| 198|Caenorhabditis elegans Hypothetical p... 35 0.067
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 32 0.36
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81556-9|CAB04522.1| 87|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 4.4
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 4.4
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 4.4
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 29 4.4
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 4.4
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 29 4.4
Z49126-3|CAA88941.2| 374|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 28 7.7
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 28 7.7
AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical... 28 7.7
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 119 bits (286), Expect = 2e-27
Identities = 57/153 (37%), Positives = 92/153 (60%)
Frame = +3
Query: 249 RLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 428
+ I LD++E++VE+LRK +E EK+ +L +L I + + ECD+++I DR
Sbjct: 229 KTIVTLDKIELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDR 288
Query: 429 ILSRAMTVEVTVRTDRDHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQP 608
+ R TV+V V T R+ +Q++AL + ID++ +H++ A QTYMNAC+ +
Sbjct: 289 LTKRTKTVQVVVETPRNEEQKKALEDATLMIDEVGEMMHSNIEKAKLCLQTYMNACSYEE 348
Query: 609 DPNAGTDKNFETAILGCTLDDQKRVKKRLQGLL 707
A T +NF I+ C DDQKR+K+RL+ L+
Sbjct: 349 TAGA-TCQNFLKIIIQCAADDQKRIKRRLENLM 380
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 119 bits (286), Expect = 2e-27
Identities = 57/153 (37%), Positives = 92/153 (60%)
Frame = +3
Query: 249 RLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 428
+ I LD++E++VE+LRK +E EK+ +L +L I + + ECD+++I DR
Sbjct: 287 KTIVTLDKIELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDR 346
Query: 429 ILSRAMTVEVTVRTDRDHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQP 608
+ R TV+V V T R+ +Q++AL + ID++ +H++ A QTYMNAC+ +
Sbjct: 347 LTKRTKTVQVVVETPRNEEQKKALEDATLMIDEVGEMMHSNIEKAKLCLQTYMNACSYEE 406
Query: 609 DPNAGTDKNFETAILGCTLDDQKRVKKRLQGLL 707
A T +NF I+ C DDQKR+K+RL+ L+
Sbjct: 407 TAGA-TCQNFLKIIIQCAADDQKRIKRRLENLM 438
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 119 bits (286), Expect = 2e-27
Identities = 57/153 (37%), Positives = 92/153 (60%)
Frame = +3
Query: 249 RLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 428
+ I LD++E++VE+LRK +E EK+ +L +L I + + ECD+++I DR
Sbjct: 288 KTIVTLDKIELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDR 347
Query: 429 ILSRAMTVEVTVRTDRDHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQP 608
+ R TV+V V T R+ +Q++AL + ID++ +H++ A QTYMNAC+ +
Sbjct: 348 LTKRTKTVQVVVETPRNEEQKKALEDATLMIDEVGEMMHSNIEKAKLCLQTYMNACSYEE 407
Query: 609 DPNAGTDKNFETAILGCTLDDQKRVKKRLQGLL 707
A T +NF I+ C DDQKR+K+RL+ L+
Sbjct: 408 TAGA-TCQNFLKIIIQCAADDQKRIKRRLENLM 439
>AF047655-8|AAC04397.1| 227|Caenorhabditis elegans Hypothetical
protein C17B7.3 protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.051
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 300 KDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILS-RAMTVEVTVRTDR 476
KDT E D++L L+ K +E ++ DKD++ + D S R+ +
Sbjct: 55 KDTNCTEGSLDAILCLLNLQKFAERSHELDMNDKDELKGFKDTCDSLRSCLANLKCSPVP 114
Query: 477 DHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQPDP 614
Q+E AL + Y D +V V++D + + C DP
Sbjct: 115 KDQKEAALRSIEKYCDAVVY-VYSDFAQCREKLNAKKSKCFDDWDP 159
>U80027-18|AAC48115.1| 198|Caenorhabditis elegans Hypothetical
protein T28A11.3 protein.
Length = 198
Score = 34.7 bits (76), Expect = 0.067
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 300 KDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILS-RAMTVEVTVRTDR 476
KDT E D++L L+ K +E ++ DKD++ + D S R+ +
Sbjct: 26 KDTNCTEGSLDAILCLLNLQKFAEKSDELDMNDKDELKGFKDTCDSLRSCLANLKCSPVP 85
Query: 477 DHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQPDP 614
Q+E AL + Y D +V V++D + + C DP
Sbjct: 86 KDQKEAALRSIEKYCDAVVY-VYSDFAQCRDKLNAKKSKCFDDWDP 130
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = -3
Query: 615 WGPAETCTRSYRSGNGNAHSLRRCARTSPADRCTCSPDTELPPADGLGQCALSPLRS*PG 436
W R Y GN R C TS AD C C T + G G C L PG
Sbjct: 1011 WTSTPNQCRDYCGSCGNQTRTRTC--TSDADGCPCQGPTTITEPCGTGVCYFPRLSCCPG 1068
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 IAVLDQVEMRV-ERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRI 431
+A+LD+ +M E L + + I + + + + + +DIS+ D ++I R+A R+
Sbjct: 218 VAILDRNKMAENENLENEILEILDNDSEKTAQIIEAARTSMGMDISDLDLENIKRFAARV 277
Query: 432 LS 437
S
Sbjct: 278 SS 279
>Z81556-9|CAB04522.1| 87|Caenorhabditis elegans Hypothetical
protein F58G1.9 protein.
Length = 87
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 333 SLLSTLDSIKHSELLLDISEC 395
++LSTLDS+ HSE L + +C
Sbjct: 16 AILSTLDSLLHSETALSVFDC 36
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 198 LPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTL 350
LPL+DE+++ + +++ + LD ++ + K+ + + EK+SL TL
Sbjct: 492 LPLLDENALTECKLKREKYLKQLDILKKKCAEAEKNAEK-DREKESLKQTL 541
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 198 LPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTL 350
LPL+DE+++ + +++ + LD ++ + K+ + + EK+SL TL
Sbjct: 478 LPLLDENALTECKLKREKYLKQLDILKKKCAEAEKNAEK-DREKESLKQTL 527
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 198 LPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTL 350
LPL+DE+++ + +++ + LD ++ + K+ + + EK+SL TL
Sbjct: 478 LPLLDENALTECKLKREKYLKQLDILKKKCAEAEKNAEK-DREKESLKQTL 527
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +3
Query: 270 QVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMT 449
+ + R+E R+ +RIE+ + L S K E LD K+ + R+ +M
Sbjct: 11 ETQRRIEYTRQKVMRIEQMNEQLRKLSKSNKGREEKLDRLLKRKESLELDVARLTDASMR 70
Query: 450 VEVTVRTDRDHQQEEALYQVNM 515
E V + H EE + +V+M
Sbjct: 71 AEPEVGAELLHSIEEPM-EVDM 91
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 294 LRKDTVR-IEEEKDSLLSTLDSIKHSEL 374
LRK T+R +E +DSL TLD+ K E+
Sbjct: 1583 LRKGTIRALEHRRDSLFGTLDNRKDDEV 1610
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +3
Query: 270 QVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMT 449
+ + R+E R+ +RIE+ + L S K E LD K+ + R+ +M
Sbjct: 11 ETQRRIEYTRQKVMRIEQMNEQLRKLSKSNKGREEKLDRLLKRKESLELDVARLTDASMR 70
Query: 450 VEVTVRTDRDHQQEEALYQVNM 515
E V + H EE + +V+M
Sbjct: 71 AEPEVGAELLHSIEEPM-EVDM 91
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 294 LRKDTVR-IEEEKDSLLSTLDSIKHSEL 374
LRK T+R +E +DSL TLD+ K E+
Sbjct: 1583 LRKGTIRALEHRRDSLFGTLDNRKDDEV 1610
>Z49126-3|CAA88941.2| 374|Caenorhabditis elegans Hypothetical
protein DH11.4 protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 422 GPH-PVPGYDRRGDSAH*-PRPSAGGSSVSGEHVHRSAGDVRAQRRSE 559
G H P PG R + H PRP+ +G+H HR GD + R E
Sbjct: 102 GKHQPAPG--ARANRVHRDPRPNGTKYGRAGKHEHREWGDRHGELRDE 147
>Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical
protein T28C6.7 protein.
Length = 459
Score = 27.9 bits (59), Expect = 7.7
Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Frame = +3
Query: 150 EVDQFALEIAYPEGSRLPLIDESSVLGTQAP--KDRLIAVLDQVEMRVERLRKDTVRIEE 323
E D+ E+ SR I+++++L Q K+++ + +++ R + ++E
Sbjct: 280 ERDRLQEEVDTLRSSRNWEIEQNALLRDQVAHLKEKVHKLTTELDASEVAKRSLSSEVDE 339
Query: 324 EKDSLLSTLDSIKHSELLLDISECDK----DDITRYADRILSRAMTVEVTVRTDRDHQQE 491
K + ++ + +E ++ ++C K +DI R D I ++ +EV ++Q
Sbjct: 340 SKKLMELMVEDLLQAESAINYNQCQKKAIFEDIDRLKDAIQAQDRFIEVLEADIVIYEQH 399
Query: 492 EALYQVNMYIDQL 530
L + N+ Q+
Sbjct: 400 IGLLRENLGASQV 412
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 471 DRDHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQ 605
D + Q E Y+ ++D LV++++ D + T+MN +S+
Sbjct: 768 DEQYTQIEQYYETQ-FVDDLVIAINEDRKRYEQQLNTFMNKISSK 811
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 471 DRDHQQEEALYQVNMYIDQLVMSVHNDAVSAHSRCQTYMNACTSQ 605
D + Q E Y+ ++D LV++++ D + T+MN +S+
Sbjct: 2009 DEQYTQIEQYYETQ-FVDDLVIAINEDRKRYEQQLNTFMNKISSK 2052
>AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical
protein F41E6.12 protein.
Length = 304
Score = 27.9 bits (59), Expect = 7.7
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 8/167 (4%)
Frame = +3
Query: 126 SESASQT-MEVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRK 302
S SAS T ++V + + P + LP +S L + D V+ E
Sbjct: 43 SASASGTPVQVASSVVPLILPPMTTLPPSTTTSTTAEPTTTTPLKSSTDSVDFDEESEGN 102
Query: 303 DTVRIEEEKDSLLSTLDSIKHSELLLDISECDK--DDITRYADRILSRAMTVEVTVRTDR 476
T E EK L +L + E S DK D + ++ S T TV +
Sbjct: 103 STASTEHEK---LGSLVKLPKPER----SSTDKVVDQVIEHSGPASSSEETKNSTVPEVK 155
Query: 477 DHQQEEALYQVNMYI----DQLVMSVHNDAVSAHSR-CQTYMNACTS 602
++ L V+ Y ++ V H D C+TY++AC S
Sbjct: 156 IEDEKGVLVFVSEYCVIERERFVKGCHGDIDKKEETFCKTYVSACAS 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,183,661
Number of Sequences: 27780
Number of extensions: 360074
Number of successful extensions: 1247
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -