Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2154
         (604 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P48906 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    37   0.32 
UniRef50_A0UWE3 Cluster: Beta-ketoacyl synthase; n=1; Clostridiu...    36   0.74 
UniRef50_Q9F3N1 Cluster: Putative uncharacterized protein SCO765...    34   3.0  
UniRef50_Q8II70 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_Q04659 Cluster: Chromosome segregation in meiosis prote...    33   5.2  

>UniRef50_P48906 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=1; Pichia canadensis|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Pichia canadensis (Yeast)
           (Hansenula wingei)
          Length = 567

 Score = 37.1 bits (82), Expect = 0.32
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -2

Query: 384 LSSVKKKNLYLYSP--RISFFLPILMAYFNANTLSTLFGYIIYLRRF 250
           L+ +K KN+  YS    I +FL I+++  N N ++++  YIIY+ ++
Sbjct: 332 LTQIKIKNILAYSGLLNIGYFLLIILSLINNNNINSILAYIIYITQY 378


>UniRef50_A0UWE3 Cluster: Beta-ketoacyl synthase; n=1; Clostridium
            cellulolyticum H10|Rep: Beta-ketoacyl synthase -
            Clostridium cellulolyticum H10
          Length = 3525

 Score = 35.9 bits (79), Expect = 0.74
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
 Frame = +2

Query: 95   FYCITALPLYKQESMIALG*K*VERCYPLNGTRANKNNTPGGGSYLFRHTHINLRKYIM* 274
            FY    L  +KQ  ++  G   VE+ YP    RA  ++   GGS    + HI L +Y   
Sbjct: 1320 FYVQRELSEWKQPVIVENG---VEKVYP---RRAGISSFGAGGS----NAHIILEEYGNN 1369

Query: 275  PNNVDNVFALK*AIKIGKKNEILGEYKYRFFFFTDDNNYSVIRRMVEVNTSNVLQDIM-- 448
             N  DN    +  +   K  E L EY  + + F   N  S +R      T    ++ M  
Sbjct: 1370 ENLTDNPKTAQIVVLSAKTREQLKEYAQKLYGFIGKNENSSLRLCDIAYTLMAGREAMDV 1429

Query: 449  LLSTTVKDI--LSRDENIFVQTKKAQG 523
             +S   KD+  LS   N +++ +  +G
Sbjct: 1430 RISVVAKDLTELSEKLNCYIEERPTEG 1456


>UniRef50_Q9F3N1 Cluster: Putative uncharacterized protein SCO7656;
           n=1; Streptomyces coelicolor|Rep: Putative
           uncharacterized protein SCO7656 - Streptomyces
           coelicolor
          Length = 173

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 164 PPISTLKQSWIPAYRVGEPLYNKIRASIPI 75
           P  +TL   W+PA  VGEP   ++RA++P+
Sbjct: 28  PAHATLLYPWLPADEVGEPELRRLRAALPV 57


>UniRef50_Q8II70 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1846

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 290 NVFALK*AIKIGKKNEILGEYKYRFFFFTDDNNYSVIRRMV--EVNTSNVLQDIMLLSTT 463
           +++ L    K+ KKN+ILG+ +    F  +DN Y    ++   E    NVL ++  +   
Sbjct: 475 DIYRLDRTFKLRKKNKILGKDRIVKLFVDNDNVYIKDFKIYQNEERYKNVLSNVKDIEIM 534

Query: 464 VKDILSRDEN 493
            +DILS  EN
Sbjct: 535 KRDILSLPEN 544


>UniRef50_Q04659 Cluster: Chromosome segregation in meiosis protein
           3; n=2; Saccharomyces cerevisiae|Rep: Chromosome
           segregation in meiosis protein 3 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 317

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 320 IGKKNEILGEYKYRFFFFTDDNNYSVIRRMVEVNTSNVLQDIMLLSTTVKD-ILSRDENI 496
           +GK + +L EY  R   F D+   S      +V T    QD+   S  V++ + S +E  
Sbjct: 118 VGKTDPVLREY--RVSLFRDEMGMSF-----DVGTRETGQDLERQSPMVEEHVTSAEERP 170

Query: 497 FVQTKKAQGKRNVNN 541
            V    AQ KRNVNN
Sbjct: 171 IVADSFAQDKRNVNN 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,601,812
Number of Sequences: 1657284
Number of extensions: 12078074
Number of successful extensions: 24789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24777
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)