Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2154
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    29   0.52 
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.91 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.1  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   2.8  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    26   3.7  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   3.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.5  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 357 YLYSPRISFFLPILMAYFNANTLSTLFGYIIYLRRFMWVCLKR 229
           ++Y    SF +PIL ++F     S L    +Y R+ +W  L R
Sbjct: 427 FIYWLYNSFIIPILQSFFYITESSDLRNRTVYFRKDIWKLLCR 469


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
 Frame = -2

Query: 522 PCAFFVCTNIFSSLLSISLTVVDNNIISCRTLDVFTSTIRLITE*LLSSVKKKNLYLYSP 343
           P A +   +I + L S+ L  +  NI   +T    +    L+ +   S  +     + S 
Sbjct: 119 PYAIYATFHISTYLRSVLLPAIYPNISDAKTASYASRVSNLLNQYTRSQFQPAMQLVASL 178

Query: 342 RISFFLPILMAYF-NANTLSTLFGYIIYLR 256
                  +    F   N++S L GYI +LR
Sbjct: 179 ETFLLFRLFFGVFLRKNSISRLVGYIFFLR 208


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 281 YLVTLYIYEGLCGCV*KGKILHRVCYFYLLGYR*VGSTFPPISTLKQSWIPAYR--VGEP 108
           Y ++L  YE +  C+ +GK+ +   Y  L      G  FP  S L  ++ P Y+  +G  
Sbjct: 743 YRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTD 801

Query: 107 LYN 99
           +Y+
Sbjct: 802 IYD 804


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 145 SNHGFLLIEWESRYTIKLELRSQFLKD 65
           S HG   IEWE ++  K  L+ +FLKD
Sbjct: 342 SAHGSAYIEWEVKFPKK--LKGKFLKD 366


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -2

Query: 369 KKNLYLYSPRISFFLPILMAYFNANTLSTLFGYIIYLRRFMW 244
           K   YLY P I  +  + MA F  N    +    I L   +W
Sbjct: 8   KPTSYLYQPFIKAYFSLNMAIFEINNSFLICAVSIALNPLLW 49


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 384 LSSVKKKNLYLYSPR-ISFFLPILMAYFNANTLSTLFGYIIYL 259
           LS+   + L +  P+ +S +LP ++ Y +      +FGY I L
Sbjct: 547 LSAFSLRQLSIKYPKELSIYLPPILDYLSVGNADFIFGYTIGL 589


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 470 DILSRDENIFVQTKKAQGK 526
           DIL RDE++FV    + GK
Sbjct: 745 DILDRDESVFVVAPTSSGK 763


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 507  VCTNIFSSLLSISLTVVDNNIISCRTLDVF 418
            VCT I  SL  ISLT+      S + LD F
Sbjct: 1030 VCTGIIDSLAPISLTIPIIGETSRKELDQF 1059


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,929
Number of Sequences: 5004
Number of extensions: 53892
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)