Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2154
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0298 + 2318836-2319051,2321238-2323106                           31   0.70 
01_04_0034 + 15318509-15319567                                         28   6.5  

>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 377 DDNNYSVIRRMVEVNTSNVLQDIMLLSTTVKDILSRDENIFVQTKKAQGKRNVNN 541
           D+   SV+RR+    + N+ Q + +  T    I + DENI  Q++       V N
Sbjct: 149 DEGQMSVVRRLSHGYSGNLQQQLAVFRTPEASIFNDDENIDPQSETVDDHNAVTN 203


>01_04_0034 + 15318509-15319567
          Length = 352

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -2

Query: 480 LSISLTVVDNN----IISCRTLDVFTSTIRLITE*LLSSVKKKNLYLYSPR-ISFF 328
           + ++LTV DN       + R LDV  +  RL  + L S+  ++ +++Y+ R ISF+
Sbjct: 109 MPVTLTVKDNKGRRVTHTMRRLDVICTLFRLYFDMLPSTAPREGVFMYNGREISFY 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,533,695
Number of Sequences: 37544
Number of extensions: 305628
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)